Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006162.1 Corchorus capsularis cultivar CVL-1 contig06180, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35111

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5455--5510
23
2.4
23
90
0
85
50
19
8
21
1.75
5979--6011
15
2.3
15
89
5
50
57
6
9
27
1.53
6066--6100
13
2.7
13
86
0
52
60
11
11
17
1.59
6055--6107
25
2.1
25
89
6
81
56
11
13
18
1.66
13997--14333
177
1.9
178
89
3
527
36
16
13
33
1.87
13997--14373
177
2.1
177
86
5
519
37
16
13
33
1.87
15093--15157
34
1.9
34
84
6
87
30
16
9
43
1.80
15432--15477
21
2.2
21
84
7
58
6
4
30
58
1.43
19905--19929
2
12.5
2
100
0
50
52
0
0
48
1.00
21577--21621
3
15.0
3
100
0
90
66
0
33
0
0.92
28821--28929
29
3.7
29
81
3
110
18
30
15
35
1.92
28951--29030
33
2.4
33
100
0
160
28
32
20
18
1.96
29123--29195
31
2.4
31
81
4
87
35
16
31
16
1.91
31485--31552
31
2.2
31
86
0
91
30
22
16
30
1.95
31988--32164
31
5.7
31
83
0
194
34
24
22
18
1.96
31986--32138
62
2.5
62
90
0
234
34
23
22
19
1.96
31988--32164
62
2.9
62
85
0
230
34
24
22
18
1.96
31995--32164
93
1.8
92
84
1
232
35
24
21
18
1.96

Tables:   1

The End!