Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006163.1 Corchorus capsularis cultivar CVL-1 contig06181, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15137
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:7372 original size:18 final size:19

Alignment explanation


    Indices: 7349--7387  Score: 62
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       7339 GGCTGGTCAA

                               
       7349 AACCGACCGAACCGA-TTG
          1 AACCGACCGAACCGACTTG

                     *         
       7367 AACCGACCGCACCGACTTG
          1 AACCGACCGAACCGACTTG

              
       7386 AA
          1 AA

       7388 ATGGTGCAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18   14  0.74
  19    5  0.26

ACGTcount: A:0.33, C:0.36, G:0.21, T:0.10


Consensus pattern (19 bp):   
AACCGACCGAACCGACTTG

Found at i:15094 original size:12 final size:12

Alignment explanation


    Indices: 15077--15102  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

      15067 TCCTTTATTT

                        
      15077 TATGTATATATA
          1 TATGTATATATA

                        
      15089 TATGTATATATA
          1 TATGTATATATA

              
      15101 TA
          1 TA

      15103 CACTTTCTTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50


Consensus pattern (12 bp):   
TATGTATATATA
Done.