Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006175.1 Corchorus capsularis cultivar CVL-1 contig06193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27043

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
986--1079
50
1.9
49
87
6
138
34
10
19
36
1.86
3625--4003
44
8.5
44
72
7
230
36
9
15
38
1.80
3625--3980
22
16.0
22
75
3
203
36
8
15
39
1.79
3941--4001
22
2.8
22
78
12
63
40
11
9
37
1.75
7634--7658
2
12.5
2
100
0
50
52
0
0
48
1.00
11340--11369
2
15.5
2
93
6
53
53
0
0
46
1.00
12130--12336
34
6.5
34
77
13
206
34
17
14
34
1.90
12125--12241
62
1.9
62
90
0
189
33
16
15
35
1.90
12219--12337
61
2.0
61
91
0
193
33
17
15
33
1.91
18526--18559
2
17.5
2
93
6
61
50
0
0
50
1.00
19430--19478
14
3.4
14
81
13
64
18
2
12
67
1.32
19561--19622
2
33.5
2
75
15
53
48
6
0
45
1.28
19582--19622
14
2.8
15
85
14
59
48
0
0
51
1.00
20541--20740
97
2.1
97
97
0
373
27
14
24
33
1.94
21039--21104
18
3.8
19
71
20
63
21
6
12
60
1.53
21049--21103
15
3.5
15
71
23
51
21
5
14
58
1.57
21037--21103
33
2.0
33
97
0
125
22
5
13
58
1.57
25328--25358
1
31.0
1
100
0
62
0
0
0
100
0.00

Tables:   1

The End!