Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006178.1 Corchorus capsularis cultivar CVL-1 contig06196, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2620
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37


Found at i:334 original size:6 final size:6

Alignment explanation


    Indices: 325--363  Score: 69
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        315 CTATTGCCAA

                 *                                       
        325 AAAAAA AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAA
          1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAA

        364 TATTGTCCAC


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00


Consensus pattern (6 bp):   
AAAAAC

Done.