Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006181.1 Corchorus capsularis cultivar CVL-1 contig06199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46096

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5295--5349
23
2.4
23
84
0
74
23
32
32
10
1.90
9056--9109
22
2.5
22
96
0
99
38
22
9
29
1.85
13000--13068
28
2.5
28
92
4
113
18
24
26
30
1.98
14881--14937
22
2.6
22
94
0
96
42
7
17
33
1.76
18492--18520
2
14.5
2
100
0
58
48
0
0
51
1.00
24314--24404
30
2.9
31
84
9
123
8
25
37
28
1.86
25187--25253
33
2.0
33
91
5
109
23
10
16
49
1.77
27686--27756
22
3.2
22
69
11
63
22
46
22
8
1.78
33139--33203
33
2.0
33
90
0
103
10
27
41
20
1.85
35232--35339
33
3.3
32
82
8
119
9
26
41
22
1.84
45033--45068
5
7.2
5
87
12
56
80
0
0
19
0.71

Tables:   1

The End!