Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006183.1 Corchorus capsularis cultivar CVL-1 contig06201, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45069

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
775--805
16
1.9
16
93
0
53
41
0
9
48
1.36
2117--2434
22
14.5
22
69
15
119
37
10
18
34
1.85
2244--2310
23
2.8
24
76
17
77
41
5
16
35
1.73
2352--2444
22
4.2
22
81
2
98
27
11
22
37
1.89
4053--4103
5
9.8
5
83
10
59
54
0
1
43
1.11
4053--4103
16
3.3
15
84
13
59
54
0
1
43
1.11
14222--14258
17
2.2
17
100
0
74
21
8
21
48
1.76
14744--14825
38
2.2
38
88
2
121
43
15
14
25
1.85
14977--15033
27
2.2
27
81
6
64
42
8
3
45
1.52
15557--15607
26
2.0
26
88
7
77
39
5
5
49
1.51
15698--15972
22
12.4
22
78
5
232
36
13
20
29
1.91
15834--16000
91
1.8
91
83
5
221
37
13
20
29
1.90
19154--19684
22
24.4
21
72
9
304
32
12
21
32
1.91
19154--19684
65
8.1
63
73
11
288
32
12
21
32
1.91
19438--19674
87
2.7
86
81
7
239
34
9
21
34
1.86
19693--19789
22
4.4
22
70
10
65
40
6
12
41
1.68
29167--29212
22
2.1
22
100
0
92
41
13
17
28
1.86
29815--29845
2
15.5
2
100
0
62
51
0
0
48
1.00
37888--37926
3
12.3
3
84
10
51
38
0
2
58
1.12
37888--37926
13
3.1
12
82
10
51
38
0
2
58
1.12
38060--38112
28
1.9
28
88
3
81
50
15
5
28
1.66
42689--42735
24
2.0
24
82
0
58
6
6
6
80
1.01

Tables:   1

The End!