Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006189.1 Corchorus capsularis cultivar CVL-1 contig06207, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61054

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
150--199
25
2.0
25
84
11
66
50
14
12
24
1.76
2162--2746
70
8.6
69
73
9
477
36
14
22
27
1.93
2077--2676
135
4.5
134
91
0
894
36
15
21
26
1.94
3547--3646
52
1.9
51
86
6
139
35
13
9
43
1.75
3882--4001
51
2.3
51
81
8
145
42
13
6
37
1.70
5415--5502
32
2.8
32
81
6
106
53
28
11
6
1.62
5409--5502
16
5.9
16
75
5
73
52
29
11
6
1.63
5763--5794
17
1.9
16
93
6
55
31
40
15
12
1.85
6827--6858
2
16.0
2
100
0
64
50
0
0
50
1.00
10086--10499
63
6.6
62
72
7
289
26
24
14
34
1.94
13654--13925
40
6.7
40
91
2
373
25
19
8
46
1.79
13915--14208
37
7.9
37
88
3
394
27
18
8
45
1.77
14258--14341
42
2.0
43
84
13
111
20
16
14
48
1.80
15435--15473
18
2.2
18
86
9
53
51
10
5
33
1.58
27600--27653
16
3.4
16
82
2
56
1
16
42
38
1.59
28447--28496
12
4.4
12
75
12
52
2
22
48
28
1.62
28470--28529
16
3.8
16
86
8
70
5
13
41
40
1.66
28469--28529
32
1.9
32
86
0
86
4
13
40
40
1.65
28567--28600
17
2.0
17
88
11
52
0
17
52
29
1.45
37721--37963
124
2.0
124
93
0
414
43
19
13
22
1.87
38734--38773
9
4.4
9
83
0
53
45
5
10
40
1.60
44442--44515
26
2.8
26
70
14
71
40
22
17
18
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49657--49726
22
3.2
21
67
15
52
24
22
7
45
1.77
52920--52983
13
4.7
13
82
7
65
37
9
4
48
1.56
52920--52983
27
2.3
27
91
2
101
37
9
4
48
1.56
53011--53044
12
2.7
13
95
4
61
41
8
5
44
1.60
52995--53025
16
1.9
16
93
0
53
35
9
6
48
1.62
52920--53044
15
8.7
13
72
22
83
37
9
8
44
1.68
53648--53703
21
2.7
21
83
2
69
75
0
12
12
1.06
54793--54876
38
2.3
37
85
6
116
40
20
10
28
1.86
54856--54898
22
2.0
22
90
9
70
37
18
11
32
1.87
54904--55158
38
6.9
37
86
4
286
30
21
16
30
1.95
54878--55186
38
8.3
38
83
4
276
31
20
16
31
1.95
54880--55187
112
2.8
110
80
6
322
31
20
16
31
1.95
54893--55173
150
1.9
148
90
2
447
32
20
16
30
1.95
55190--55311
62
2.0
59
85
7
165
27
26
16
29
1.97
55275--55497
34
6.3
35
78
13
215
35
21
4
38
1.73
55325--55373
23
2.1
23
88
0
71
30
20
4
44
1.70
55354--55485
8
15.4
8
69
18
79
35
21
3
40
1.69
55283--55488
51
3.9
51
82
10
220
35
21
3
39
1.70
55473--55518
23
2.0
23
91
0
74
30
21
6
41
1.78
55348--55505
85
1.9
85
90
5
257
35
22
3
39
1.70
56310--56355
13
3.3
14
80
17
51
30
10
17
41
1.84
60835--60915
42
1.9
42
97
0
153
51
13
3
30
1.58

Tables:   1

The End!