Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000619.1 Corchorus capsularis cultivar CVL-1 contig00619, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2900
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32


Found at i:66 original size:28 final size:30

Alignment explanation


    Indices: 26--104  Score: 135
    Period size: 30  Copynumber: 2.7  Consensus size: 30

         16 CAGCATGCAG

                                          
         26 CCCCAGCTGCTGGAAAATGAT-AA-ATTTT
          1 CCCCAGCTGCTGGAAAATGATAAATATTTT

                  *                       
         54 CCCCAGTTGCTGGAAAATGATAAATATTTT
          1 CCCCAGCTGCTGGAAAATGATAAATATTTT

                                 
         84 CCCCAGCTGCTGGAAAATGAT
          1 CCCCAGCTGCTGGAAAATGAT

        105 TGGTGAACTA


Statistics
Matches: 47,  Mismatches: 2, Indels: 2
        0.92            0.04        0.04

Matches are distributed among these distances:
  28   20  0.43
  29    2  0.04
  30   25  0.53

ACGTcount: A:0.32, C:0.22, G:0.19, T:0.28


Consensus pattern (30 bp):   
CCCCAGCTGCTGGAAAATGATAAATATTTT

Done.