Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006190.1 Corchorus capsularis cultivar CVL-1 contig06208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35100

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1531--1613
32
2.6
32
82
3
87
8
44
33
13
1.74
3066--3448
156
2.5
155
76
9
375
34
19
16
28
1.94
7767--7793
14
1.9
14
100
0
54
29
0
25
44
1.54
9741--10376
35
18.1
35
86
5
707
25
21
9
42
1.83
9741--10376
106
6.0
105
83
7
754
25
21
9
42
1.83
10364--10468
35
3.0
36
88
5
162
28
9
10
51
1.67
10390--10448
19
3.3
19
68
22
54
25
8
10
55
1.61
10397--10455
16
3.2
20
63
22
56
30
6
10
52
1.61
9741--10376
179
3.6
173
85
6
672
25
21
9
42
1.83
10469--10558
11
7.6
11
88
11
126
7
26
7
57
1.54
10469--10559
23
3.8
23
87
12
139
7
26
7
58
1.53
10479--10559
12
6.4
14
79
18
74
7
25
7
59
1.51
10678--10811
71
1.9
70
84
9
182
26
17
11
44
1.83
17510--17611
27
3.7
28
85
8
140
18
13
24
43
1.87
25129--25488
156
2.3
155
78
8
354
35
18
15
30
1.93
26413--26456
21
2.0
23
82
8
56
38
11
13
36
1.81
27119--27148
15
2.0
15
100
0
60
20
33
20
26
1.97
28313--28362
22
2.2
25
82
13
63
64
8
0
28
1.22
28402--28441
17
2.2
19
91
8
66
37
2
0
60
1.11
30466--30506
3
14.0
3
94
5
75
65
0
0
34
0.93
30515--30539
9
2.8
9
100
0
50
44
0
8
48
1.32
32096--32334
92
2.6
92
98
0
460
26
19
16
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32324--32364
20
2.0
20
100
0
82
19
21
9
48
1.77

Tables:   1

The End!