Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006192.1 Corchorus capsularis cultivar CVL-1 contig06210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26845

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4014--4056
12
3.4
12
75
12
50
76
2
11
9
1.10
4479--4562
41
2.0
42
93
2
143
41
5
5
46
1.52
4483--4570
42
2.1
41
87
2
122
43
5
6
44
1.54
4882--4919
11
3.5
11
89
10
51
39
0
2
57
1.12
13223--13260
19
2.0
20
85
15
53
28
5
2
63
1.30
13436--13597
22
7.3
22
72
10
98
32
10
19
38
1.85
13434--13543
44
2.5
44
77
7
116
32
10
18
38
1.85
13434--13560
66
1.9
66
84
9
168
33
11
18
37
1.86
13619--13747
56
2.3
56
80
7
129
37
8
16
37
1.79
13708--14014
22
13.8
22
67
17
98
41
9
14
34
1.78
13848--14011
66
2.5
65
75
5
161
42
8
13
35
1.75
14054--14657
22
27.9
21
67
15
159
38
10
16
35
1.83
14120--14660
44
12.4
44
69
8
250
38
10
16
34
1.84
15165--15207
15
3.0
15
83
6
54
65
0
0
34
0.93
15823--15865
17
2.6
16
85
10
59
34
20
23
20
1.96
17175--17207
2
16.5
2
100
0
66
48
0
0
51
1.00
19716--19763
23
2.1
23
92
3
80
52
10
20
16
1.73
24782--24816
17
2.1
16
94
5
61
45
0
0
54
0.99
25493--25613
61
2.0
61
96
0
224
35
12
23
28
1.91

Tables:   1

The End!