Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006196.1 Corchorus capsularis cultivar CVL-1 contig06214, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25289

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
861--1015
72
2.2
71
85
6
201
52
0
12
34
1.44
3411--3442
16
2.0
16
93
0
55
28
25
21
25
1.99
8157--8217
29
2.1
29
84
6
79
65
8
1
24
1.29
8916--8961
16
2.9
17
81
15
62
43
0
0
56
0.99
8917--8963
10
4.8
10
82
12
62
40
0
0
59
0.97
9893--10038
68
2.2
67
93
2
256
20
10
17
50
1.76
9991--10067
40
1.9
41
97
2
147
18
10
20
50
1.75
10426--10478
25
2.1
25
92
0
88
67
13
11
7
1.40
10422--10488
25
2.5
27
80
14
84
64
16
8
10
1.49
10626--10691
32
2.1
33
86
11
93
31
18
12
37
1.87
12680--13283
49
12.4
49
89
1
709
31
15
30
22
1.95
14978--15046
22
3.1
22
79
4
77
27
17
36
18
1.94
16044--16075
13
2.5
13
95
5
57
40
6
15
37
1.73
16076--16103
2
14.0
2
100
0
56
50
0
0
50
1.00
24332--24377
8
5.2
8
80
19
56
47
4
21
26
1.69
24338--24374
10
3.9
10
86
13
60
51
5
21
21
1.68
24332--24377
18
2.6
18
100
0
92
47
4
21
26
1.69

Tables:   1

The End!