Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006197.1 Corchorus capsularis cultivar CVL-1 contig06215, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18861

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
859--1010
41
3.7
40
77
11
157
34
14
15
35
1.88
3202--3247
12
3.6
12
78
16
56
13
30
41
15
1.85
3203--3261
27
2.2
27
93
0
109
11
32
40
15
1.83
3603--3925
162
2.0
162
100
0
646
35
13
17
34
1.88
4234--4294
32
1.9
32
87
9
90
36
14
11
37
1.83
8041--8129
16
5.6
16
81
5
108
33
34
21
10
1.87
8996--9072
9
9.6
9
71
23
64
29
36
23
10
1.88
8971--9071
47
2.1
48
87
5
143
29
35
23
10
1.89
8996--9087
16
5.8
16
87
1
114
31
35
21
10
1.88
8989--9088
48
2.1
47
84
1
128
33
35
21
11
1.88
10201--10240
10
3.7
11
83
16
57
25
5
2
67
1.23
10210--10251
20
2.0
21
90
4
68
21
7
4
66
1.35
17239--17501
87
3.0
87
98
0
508
33
16
2
47
1.59

Tables:   1

The End!