Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006201.1 Corchorus capsularis cultivar CVL-1 contig06220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94243
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Found at i:831 original size:25 final size:25
Alignment explanation
Indices: 803--851 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
793 AAAAATTATC
803 ATAAT-TTCTAAAATCAAGGGATTCA
1 ATAATATT-TAAAATCAAGGGATTCA
828 ATAATACTTTAAAATCAAGGGATT
1 ATAATA-TTTAAAATCAAGGGATT
852 TATCCTGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.23
26 15 0.68
27 2 0.09
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (25 bp):
ATAATATTTAAAATCAAGGGATTCA
Found at i:2870 original size:15 final size:14
Alignment explanation
Indices: 2847--2876 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
2837 AATAAAATTA
2847 AATATTTTTATTTT
1 AATATTTTTATTTT
2861 AATATATTTTATTTT
1 AATAT-TTTTATTTT
2876 A
1 A
2877 TTTAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
AATATTTTTATTTT
Found at i:2877 original size:20 final size:20
Alignment explanation
Indices: 2852--2890 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2842 AATTAAATAT
*
2852 TTTTATTTTAATATATTTTA
1 TTTTATTTAAATATATTTTA
*
2872 TTTTATTTAAATTTATTTT
1 TTTTATTTAAATATATTTT
2891 TAAAATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTATTTAAATATATTTTA
Found at i:5718 original size:27 final size:27
Alignment explanation
Indices: 5680--5763 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
5670 TTGATCATAT
* * *
5680 ACCTACAAGGGTGTGACGAACTTCGCC
1 ACCTACAAGGGTGTGAAGAACGTCACC
* *
5707 ACCTCCAAGGGTGTGAAGAACGTCCCC
1 ACCTACAAGGGTGTGAAGAACGTCACC
*
5734 AGCTACAAGGGTGTGAAGAACGTCACC
1 ACCTACAAGGGTGTGAAGAACGTCACC
5761 ACC
1 ACC
5764 CTCACGCTTC
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.29, C:0.30, G:0.26, T:0.15
Consensus pattern (27 bp):
ACCTACAAGGGTGTGAAGAACGTCACC
Found at i:6524 original size:53 final size:53
Alignment explanation
Indices: 6457--6737 Score: 255
Period size: 53 Copynumber: 5.4 Consensus size: 53
6447 AGGTCAACGT
* * *
6457 CCAGGACTCTTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGTGCGATGA
1 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGA
* * ** * *
6510 CCAGGACTCCTCCGGGAGAAC-A--TCTCGTATACGCTTGAATGGA-CGAGTG-C--
1 CCAGGACTCCTCCGGGAGAACGACGCCTC-CATATTC-T-AA-GGAGCGGGCGACGA
6560 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGA
1 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGA
* * * * * ** *
6613 CTAGGACTCCTCTGGGAGAACGTCTCGT--ATACGCTTGAATGGA-CGAGCG-C--
1 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTC-T-AA-GGAGCGGGCGACGA
6663 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGA
1 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGA
6716 CCAGGACTCCTCCGGGAGAACG
1 CCAGGACTCCTCCGGGAGAACG
6738 TCTCGTATAC
Statistics
Matches: 178, Mismatches: 30, Indels: 40
0.72 0.12 0.16
Matches are distributed among these distances:
49 6 0.03
50 60 0.34
51 13 0.07
52 12 0.07
53 81 0.46
54 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.17
Consensus pattern (53 bp):
CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGA
Found at i:6571 original size:50 final size:50
Alignment explanation
Indices: 6510--6762 Score: 180
Period size: 50 Copynumber: 4.9 Consensus size: 50
6500 CGTGCGATGA
*
6510 CCAGGACTCCTCCGGGAGAACATCTCGTATACGCTTGAATGGACGAGTGC
1 CCAGGACTCCTCCGGGAGAACATCTCGTATACGCTTGAATGGACGAGCGC
* * ** *
6560 CCAGGACTCCTCCGGGAGAACGACGCCTC-CATATTC-T-AA-GGAGCGGGCGAC
1 CCAGGACTCCTCCGGGAGAAC-A--TCTCGTATACGCTTGAATGGA-CGAGCG-C
* * *
6611 GACTAGGACTCCTCTGGGAGAACGTCTCGTATACGCTTGAATGGACGAGCGC
1 --CCAGGACTCCTCCGGGAGAACATCTCGTATACGCTTGAATGGACGAGCGC
* * ** *
6663 CCAGGACTCCTCCGGGAGAACGACGCCTC-CATATTC-T-AA-GGAGCGGGCGAC
1 CCAGGACTCCTCCGGGAGAAC-A--TCTCGTATACGCTTGAATGGA-CGAGCG-C
* *
6714 GACCAGGACTCCTCCGGGAGAACGTCTCGTATACGCTTGGATGGACGAG
1 --CCAGGACTCCTCCGGGAGAACATCTCGTATACGCTTGAATGGACGAG
6763 TCTCCATTTC
Statistics
Matches: 152, Mismatches: 29, Indels: 41
0.68 0.13 0.18
Matches are distributed among these distances:
49 6 0.04
50 59 0.39
51 13 0.09
52 11 0.07
53 57 0.38
54 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.17
Consensus pattern (50 bp):
CCAGGACTCCTCCGGGAGAACATCTCGTATACGCTTGAATGGACGAGCGC
Found at i:6639 original size:103 final size:103
Alignment explanation
Indices: 6457--6763 Score: 542
Period size: 103 Copynumber: 3.0 Consensus size: 103
6447 AGGTCAACGT
* * *
6457 CCAGGACTCTTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGTGCGATGACCAGGACTCCTC
1 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGACCAGGACTCCTC
*
6522 CGGGAGAACATCTCGTATACGCTTGAATGGACGAGTGC
66 CGGGAGAACGTCTCGTATACGCTTGAATGGACGAGTGC
*
6560 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGACTAGGACTCCTC
1 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGACCAGGACTCCTC
* *
6625 TGGGAGAACGTCTCGTATACGCTTGAATGGACGAGCGC
66 CGGGAGAACGTCTCGTATACGCTTGAATGGACGAGTGC
6663 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGACCAGGACTCCTC
1 CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGACCAGGACTCCTC
*
6728 CGGGAGAACGTCTCGTATACGCTTGGATGGACGAGT
66 CGGGAGAACGTCTCGTATACGCTTGAATGGACGAGT
6764 CTCCATTTCG
Statistics
Matches: 193, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 193 1.00
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.18
Consensus pattern (103 bp):
CCAGGACTCCTCCGGGAGAACGACGCCTCCATATTCTAAGGAGCGGGCGACGACCAGGACTCCTC
CGGGAGAACGTCTCGTATACGCTTGAATGGACGAGTGC
Found at i:19715 original size:19 final size:20
Alignment explanation
Indices: 19691--19737 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
19681 AAACGGATTA
19691 AAAGCAAT-GGATTATAAAG
1 AAAGCAATAGGATTATAAAG
* *
19710 AAAGCAATAGGGTTATAATG
1 AAAGCAATAGGATTATAAAG
19730 AAAGCAAT
1 AAAGCAAT
19738 TAAATAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.51, C:0.06, G:0.21, T:0.21
Consensus pattern (20 bp):
AAAGCAATAGGATTATAAAG
Found at i:36520 original size:14 final size:14
Alignment explanation
Indices: 36498--36535 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
36488 AAGGACGGCA
* *
36498 GAGAGAGAGAGAAT
1 GAGAAAGAGACAAT
36512 GAGAAAGAGACAAT
1 GAGAAAGAGACAAT
36526 GAGAAAGAGA
1 GAGAAAGAGA
36536 AAAGTGGGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.55, C:0.03, G:0.37, T:0.05
Consensus pattern (14 bp):
GAGAAAGAGACAAT
Found at i:45054 original size:24 final size:24
Alignment explanation
Indices: 45023--45071 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
45013 AATGGTAAAT
45023 TTTAGAATTAAACACTTATTTTTA
1 TTTAGAATTAAACACTTATTTTTA
45047 TTTAGAATTAAACACTTATTTTTA
1 TTTAGAATTAAACACTTATTTTTA
45071 T
1 T
45072 AGGATTTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (24 bp):
TTTAGAATTAAACACTTATTTTTA
Found at i:45136 original size:11 final size:11
Alignment explanation
Indices: 45120--45147 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
45110 TTTATTTAGA
45120 ATTAAACACTT
1 ATTAAACACTT
45131 ATTAAACACTT
1 ATTAAACACTT
45142 ATTAAA
1 ATTAAA
45148 ATCTAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (11 bp):
ATTAAACACTT
Found at i:46964 original size:22 final size:22
Alignment explanation
Indices: 46926--46974 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
46916 CAAGTAAACA
46926 TAAACTAAAACTACTACAATAC
1 TAAACTAAAACTACTACAATAC
*
46948 TGAAACTATAA-TACTACAATAC
1 T-AAACTAAAACTACTACAATAC
46970 TAAAC
1 TAAAC
46975 ATATGAAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 4 0.16
22 13 0.52
23 8 0.32
ACGTcount: A:0.53, C:0.20, G:0.02, T:0.24
Consensus pattern (22 bp):
TAAACTAAAACTACTACAATAC
Found at i:47775 original size:135 final size:131
Alignment explanation
Indices: 47551--47883 Score: 411
Period size: 135 Copynumber: 2.5 Consensus size: 131
47541 CTTCTTTTAA
* *
47551 GATGATTCTCAAGTTTAAAACAGGGAAGATTTCAAGGGATTCCTCTTTGAAAGCCTTCACCTTCA
1 GATGATTCTCAAGTTTAAAACAGGGGAGATTTCAAGGGATTCCTCTTTGAAAGCGTTCACCTTCA
* * * * ****
47616 AAGAAGATTTATACTGATGGAAGAAAACACTGAAATAACGATTTAACAAATACCAAGGGTCTCCC
66 AAGAAGATTGATACTGATGAAAGAAAAAACTGAAACAACG----AACAAATACCAACAACCTCCC
*
47681 TTTGT
127 TTTGG
*
47686 GATGATTCTCAAGTTTAAAACAGGGGAGACTTCAAGGGATTCCTCTTTGAAAGCGTTCACCTTCA
1 GATGATTCTCAAGTTTAAAACAGGGGAGATTTCAAGGGATTCCTCTTTGAAAGCGTTCACCTTCA
* ** * *
47751 AAGAAGATTGATGCTTCTGAAAGAAAAAATTGGAACAACGAACAAATACCAACAACCTCCCTTTG
66 AAGAAGATTGATACTGATGAAAGAAAAAACTGAAACAACGAACAAATACCAACAACCTCCCTTTG
47816 G
131 G
* * * * *
47817 GATGA-T-T-AAGTTTAAAACATGAGAGATTTCATGAGATTCCTCTTTGAAAGCGTTAACCTTCA
1 GATGATTCTCAAGTTTAAAACAGGGGAGATTTCAAGGGATTCCTCTTTGAAAGCGTTCACCTTCA
47879 AAGAA
66 AAGAA
47884 AGGGTAGTGA
Statistics
Matches: 175, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
128 54 0.31
129 1 0.01
130 1 0.01
131 26 0.15
135 93 0.53
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (131 bp):
GATGATTCTCAAGTTTAAAACAGGGGAGATTTCAAGGGATTCCTCTTTGAAAGCGTTCACCTTCA
AAGAAGATTGATACTGATGAAAGAAAAAACTGAAACAACGAACAAATACCAACAACCTCCCTTTG
G
Found at i:48452 original size:109 final size:108
Alignment explanation
Indices: 48314--48563 Score: 344
Period size: 109 Copynumber: 2.3 Consensus size: 108
48304 CTAAAACTCT
* * *
48314 AAAATAAAATATTTTATAATTGGGCCTAAACTTTATTTATAAGTATTTAAACTTATTTTTCTAAA
1 AAAATGAAATATTTTATAATTGGGCCTAAACCTTATTAATAAGTATTTAAACTTATTTTTCTAAA
* *
48379 ACCTCATGATAATGAGTCTCAAAATTTGAGATTTA-CCTTTAA
66 ACCTCATAATAATGAGTCTCAAAATTTAAGATTTACCCTTTAA
* * *
48421 AAAATTGAAATATGTTTATAATTGGGGCTAAACCTTATTAATAAGTGTTTAAATTTATTTTTCTA
1 AAAA-TGAAATAT-TTTATAATTGGGCCTAAACCTTATTAATAAGTATTTAAACTTATTTTTCTA
* * *
48486 AAACCTTATAATAATGGGTCTTAAAATTTAAGATTTACCCTTTAA
64 AAACCTCATAATAATGAGTCTCAAAATTTAAGATTTACCCTTTAA
* *
48531 AAAATGGAATATTTT-T-ATTTGGCCTAAACCTTA
1 AAAATGAAATATTTTATAATTGGGCCTAAACCTTA
48564 ATTATTATCA
Statistics
Matches: 126, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
106 15 0.12
107 5 0.04
108 10 0.08
109 85 0.67
110 11 0.09
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (108 bp):
AAAATGAAATATTTTATAATTGGGCCTAAACCTTATTAATAAGTATTTAAACTTATTTTTCTAAA
ACCTCATAATAATGAGTCTCAAAATTTAAGATTTACCCTTTAA
Found at i:53732 original size:47 final size:48
Alignment explanation
Indices: 53681--53778 Score: 162
Period size: 50 Copynumber: 2.0 Consensus size: 48
53671 TCAATTATTA
*
53681 TCCAAAATTGGGTT-AAAAAATAGTTTGCAATAATTTGTAATTTTTTG
1 TCCAAAATTGGGTTAAAAAAACAGTTTGCAATAATTTGTAATTTTTTG
53728 TCCAAAATTGGGTTAAAAAAAAACAGTTTGCAATAATTTGTAATTTTTTG
1 TCCAAAATTGGGTT--AAAAAAACAGTTTGCAATAATTTGTAATTTTTTG
53778 T
1 T
53779 GAATAAAAGA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 14 0.30
50 33 0.70
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (48 bp):
TCCAAAATTGGGTTAAAAAAACAGTTTGCAATAATTTGTAATTTTTTG
Found at i:54213 original size:14 final size:14
Alignment explanation
Indices: 54194--54227 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
54184 ACAAAAAATG
*
54194 AAGCTTAATTATCT
1 AAGCTTAATTATCA
54208 AAGCTTAATTATCA
1 AAGCTTAATTATCA
54222 AAGCTT
1 AAGCTT
54228 GAAGCCTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (14 bp):
AAGCTTAATTATCA
Found at i:54464 original size:1 final size:1
Alignment explanation
Indices: 54458--54495 Score: 76
Period size: 1 Copynumber: 38.0 Consensus size: 1
54448 TGCTACCTTC
54458 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
54496 ATCAAACTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:54644 original size:3 final size:3
Alignment explanation
Indices: 54636--54683 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
54626 ATATTATGGT
54636 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
54684 AGTAGAGTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:58979 original size:337 final size:331
Alignment explanation
Indices: 58372--59036 Score: 982
Period size: 337 Copynumber: 2.0 Consensus size: 331
58362 ACTTTAAAAC
58372 AAAATGATTTATTAAAAACTATCTAAAGGAATTTTGCTAAATGAAATTAAATGGTACTAGAGTTT
1 AAAATGATTTATTAAAAACTATCTAAAGGAATTTTGCTAAATGAAATTAAATGGTACTAGAGTTT
* * *
58437 TTTAAGTTTAAATTTAAAGGTTTATTGAAAAAATAGCCCCTTGGACTACACGAAAGACATCAAAT
66 TCTAAGTTTAAATTTAAAGGTTTATTGAAAAAATAGCCCATTGAACTACACGAAAGACATCAAAT
** *
58502 AAGTTTATGAACTTTAATTTTGACCAATTGAACCCCTAAAAAATCCAATTTTACCCAGATAAGCC
131 AAGTCCATGAACTTTAATTTTAACCAATTGAACCCCTAAAAAATCCAATTTTACCCAGATAAGCC
* *
58567 CTTCTTCTGTTGGAAAAAGCCACACTAGAATGCACGTGGCCTAAAAATGACACATCAGCTAAAGG
196 CCTCTTCTGTTAGAAAAAGCCACACTAGAATGCACGTGGCCTAAAAATGACACATCAGCTAAAGG
*
58632 TAATTTTTTTTGAAAAAAAAAATT-AAAA-ACTGATAGCATAAAAAT-AATTTTTCTAAAAATGA
261 TAATTTTTTTT-AAAAAAAAAATTAAAAAGACTGATAGCATAAAAATAAATTTTTCAAAAAATGA
58694 CTTTTAG
325 CTTTTAG
* * *
58701 AAAATGATTTATTAAAATCTATCTAAATGAATTTTGCTAAATGAAAATTATGGAATTAAATTGTA
1 AAAATGATTTATTAAAAACTATCTAAAGGAATTTTGCTAAATG------A---AATTAAATGGTA
*
58766 CTAGAGTTTTCTAAGTTTAAA-TTAAAGGTTTATTGAAAATATAGCCCATTGAACTACACGAAAG
57 CTAGAGTTTTCTAAGTTTAAATTTAAAGGTTTATTGAAAAAATAGCCCATTGAACTACACGAAAG
* *
58830 ATATCAAATAAGTCCATGAACTTTAATTTTAACCAATTGAACCCCTAAAAAATCCAATTTTAGCC
122 ACATCAAATAAGTCCATGAACTTTAATTTTAACCAATTGAACCCCTAAAAAATCCAATTTTACCC
* * *
58895 AGATAAGCCCCTCTGT-TGTTAGAAAAAGCCACACTAGAATGCCATGTGGCCTAAACATGCCACA
187 AGATAAGCCCCTCT-TCTGTTAGAAAAAGCCACACTAGAATG-CACGTGGCCTAAAAATGACACA
* * *
58959 TCAGCTTAGGGTAATTTTTTTT-AAAAAAAAATTAAAAATGACTGATGGCATAAAAATAAATTTT
250 TCAGCTAAAGGTAATTTTTTTTAAAAAAAAAATTAAAAA-GACTGATAGCATAAAAATAAATTTT
59023 TCAAAAAATGACTT
314 TCAAAAAATGACTT
59037 CTGAATTTAA
Statistics
Matches: 300, Mismatches: 21, Indels: 19
0.88 0.06 0.06
Matches are distributed among these distances:
329 41 0.14
335 1 0.00
336 11 0.04
337 141 0.47
338 71 0.24
339 16 0.05
340 19 0.06
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (331 bp):
AAAATGATTTATTAAAAACTATCTAAAGGAATTTTGCTAAATGAAATTAAATGGTACTAGAGTTT
TCTAAGTTTAAATTTAAAGGTTTATTGAAAAAATAGCCCATTGAACTACACGAAAGACATCAAAT
AAGTCCATGAACTTTAATTTTAACCAATTGAACCCCTAAAAAATCCAATTTTACCCAGATAAGCC
CCTCTTCTGTTAGAAAAAGCCACACTAGAATGCACGTGGCCTAAAAATGACACATCAGCTAAAGG
TAATTTTTTTTAAAAAAAAAATTAAAAAGACTGATAGCATAAAAATAAATTTTTCAAAAAATGAC
TTTTAG
Found at i:60750 original size:4 final size:4
Alignment explanation
Indices: 60743--60786 Score: 74
Period size: 4 Copynumber: 11.5 Consensus size: 4
60733 TAGTATAGAT
60743 ATAG ATAG ATAG AT-- ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
60787 TATAAATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
4 36 0.95
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (4 bp):
ATAG
Found at i:60756 original size:14 final size:14
Alignment explanation
Indices: 60727--60786 Score: 84
Period size: 14 Copynumber: 4.1 Consensus size: 14
60717 CTCGTACTTT
*
60727 TATATATAGTATAGA
1 TATAGATAG-ATAGA
60742 TATAGATAGATAGA
1 TATAGATAGATAGA
60756 TATAGATAGATAGA
1 TATAGATAGATAGA
60770 TAGATAGATAGATAGA
1 T--ATAGATAGATAGA
60786 T
1 T
60787 TATAAATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
14 20 0.48
15 8 0.19
16 14 0.33
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (14 bp):
TATAGATAGATAGA
Found at i:67502 original size:16 final size:16
Alignment explanation
Indices: 67481--67520 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
67471 AACATAAAAG
67481 GTACACATAAATTTAA
1 GTACACATAAATTTAA
67497 GTACACATAAATTTAA
1 GTACACATAAATTTAA
67513 GTA-ACATA
1 GTACACATA
67521 TATATATGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 5 0.21
16 19 0.79
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.30
Consensus pattern (16 bp):
GTACACATAAATTTAA
Found at i:73561 original size:41 final size:40
Alignment explanation
Indices: 73498--73579 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 40
73488 ACTTGACTCT
*
73498 CCTAATAATTAAGGAAATAAATTAAATCCAGGTTTAGTCCC
1 CCTAATAATTAAGGAAAGAAATTAAATCCAGGTTTAG-CCC
*
73539 CCTAATAATTAAGGTAAGAAATTAAATCCAGGTTTAGCCC
1 CCTAATAATTAAGGAAAGAAATTAAATCCAGGTTTAGCCC
73579 C
1 C
73580 TAGTTATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 4 0.10
41 35 0.90
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.28
Consensus pattern (40 bp):
CCTAATAATTAAGGAAAGAAATTAAATCCAGGTTTAGCCC
Found at i:81288 original size:19 final size:20
Alignment explanation
Indices: 81264--81307 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
81254 CAAGAGTTAC
*
81264 AATTATCAAG-CAAA-AAATT
1 AATTAT-AAGTCAAATAAAAT
81283 AATTATAAGTCAAATAAAAT
1 AATTATAAGTCAAATAAAAT
81303 AATTA
1 AATTA
81308 CACGTTAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 10 0.45
20 9 0.41
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.30
Consensus pattern (20 bp):
AATTATAAGTCAAATAAAAT
Found at i:81386 original size:96 final size:96
Alignment explanation
Indices: 81267--81443 Score: 318
Period size: 96 Copynumber: 1.8 Consensus size: 96
81257 GAGTTACAAT
*
81267 TATCAAGCAAAAAATTAATTATAAGTCAAATAAAATAATTACACGTTAGGGAAATAATAAATTTT
1 TATCAAGCAAAAAATTAATTATAAGTCAAATAAAATAATTACACATTAGGGAAATAATAAATTTT
81332 AAACATAATACGTTAACCTATTCCAATTATA
66 AAACATAATACGTTAACCTATTCCAATTATA
81363 TATCAAGCAAAAAATTAATTATAAGTCAAATAAAATAATTACACATTAGGGAAATAATAAATTTT
1 TATCAAGCAAAAAATTAATTATAAGTCAAATAAAATAATTACACATTAGGGAAATAATAAATTTT
** *
81428 ATTCATAATATGTTAA
66 AAACATAATACGTTAA
81444 ACTGTTAAAT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 77 1.00
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.32
Consensus pattern (96 bp):
TATCAAGCAAAAAATTAATTATAAGTCAAATAAAATAATTACACATTAGGGAAATAATAAATTTT
AAACATAATACGTTAACCTATTCCAATTATA
Found at i:81660 original size:26 final size:24
Alignment explanation
Indices: 81630--81684 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 24
81620 TAAAGAAATT
81630 ATAAAGAAATTAGA-TTTAATAATTGA
1 ATAAA-AAA-TAGAGTTT-ATAATTGA
*
81656 AT-AAAAATAGAGTTTTTAATTGA
1 ATAAAAAATAGAGTTTATAATTGA
81679 ATAAAA
1 ATAAAA
81685 CTATAATAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 13 0.50
24 9 0.35
25 2 0.08
26 2 0.08
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.35
Consensus pattern (24 bp):
ATAAAAAATAGAGTTTATAATTGA
Found at i:83245 original size:66 final size:66
Alignment explanation
Indices: 83139--83268 Score: 206
Period size: 66 Copynumber: 2.0 Consensus size: 66
83129 AAATAATAAT
* * * *
83139 TTTATTGATTGATCAAATGAAAGTGGGTACAATCTTTGTAAATTCTAGTAACAAGAAATTATCCA
1 TTTATTGATTGATCAAATAAAAGTGGGTACAATCTTTGTAAATTCTAATAAAAAGAAATGATCCA
83204 C
66 C
* *
83205 TTTATTTATTGATCAAATAAAAGTGGGTACGATCTTTGTAAATTCTAATAAAAAGAAATGATCC
1 TTTATTGATTGATCAAATAAAAGTGGGTACAATCTTTGTAAATTCTAATAAAAAGAAATGATCC
83269 TCTGATTCTT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (66 bp):
TTTATTGATTGATCAAATAAAAGTGGGTACAATCTTTGTAAATTCTAATAAAAAGAAATGATCCA
C
Found at i:88889 original size:11 final size:12
Alignment explanation
Indices: 88873--88905 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
88863 TAATGAACCA
88873 TAAACGAAT-TT
1 TAAACGAATATT
*
88884 TAAACGAGTATT
1 TAAACGAATATT
88896 TAAACGAATA
1 TAAACGAATA
88906 ATAAACAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.30
Consensus pattern (12 bp):
TAAACGAATATT
Found at i:92613 original size:22 final size:22
Alignment explanation
Indices: 92571--92614 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
92561 TTTTCATATG
*
92571 AAATTATGATAATCTCTCTATT
1 AAATTATGATAATCTCACTATT
92593 AAATTATGATAAT-TACACTATT
1 AAATTATGATAATCT-CACTATT
92615 TTTTATGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (22 bp):
AAATTATGATAATCTCACTATT
Found at i:92654 original size:22 final size:22
Alignment explanation
Indices: 92629--93233 Score: 134
Period size: 22 Copynumber: 27.9 Consensus size: 22
92619 ATGATCCCAT
92629 TATGAAATTTTGATAACCTTCC
1 TATGAAATTTTGATAACCTTCC
* *** *
92651 TATGAAATTTTAATAATAATAC
1 TATGAAATTTTGATAACCTTCC
* * **
92673 TATGAAATTTCGAGAACCTTTT
1 TATGAAATTTTGATAACCTTCC
** *
92695 TAT-AAACTTTTTTTTAACCTTCT
1 TATGAAA--TTTTGATAACCTTCC
* *
92718 TATGAAATTTTGTTAACCTCCC
1 TATGAAATTTTGATAACCTTCC
* * * *
92740 TAAGGAATTTTGA-AGATC-TCAA
1 TATGAAATTTTGATA-ACCTTC-C
*
92762 TATGAAATTTTGATAA-TTTCCC
1 TATGAAATTTTGATAACCTT-CC
* * * **
92784 AATAAAAATTTGATAACCAACAC
1 TATGAAATTTTGATAACCTTC-C
* *
92807 TATGAGATGTTGATAACC-TCC
1 TATGAAATTTTGATAACCTTCC
* * ****
92828 ATATGATATATTGATAACCAAGT
1 -TATGAAATTTTGATAACCTTCC
* * *
92851 TATGAAAATTTAAAAACC-TCC
1 TATGAAATTTTGATAACCTTCC
* *
92872 ATATG-AATTGTT-AGTAATC-ACAC
1 -TATGAAATT-TTGA-TAACCTTC-C
* * *
92895 TCTGAAATTTTGATAATC-ACAC
1 TATGAAATTTTGATAACCTTC-C
* *
92917 TATAAAATTGTGATAACC-TCGC
1 TATGAAATTTTGATAACCTTC-C
* * *
92939 TATGAAATTTTAATAAATCTTAC
1 TATGAAATTTTGAT-AACCTTCC
* *
92962 TATAAAATTTTGATATAAACCTCCC
1 TATGAAATTTTG--AT-AACCTTCC
* * *
92987 TATAAAATTTTGATAACTTTCT
1 TATGAAATTTTGATAACCTTCC
* *
93009 TA-CAAATCTTGATAA-----C
1 TATGAAATTTTGATAACCTTCC
* * *
93025 TA-CAAATTTTAATAACCTCCC
1 TATGAAATTTTGATAACCTTCC
** *
93046 TATGATTTTTTGATAACC-TCAT
1 TATGAAATTTTGATAACCTTC-C
** * *
93068 TATGAAATTTTCTTAATCTCCC
1 TATGAAATTTTGATAACCTTCC
* *
93090 TATGAAATTTTGATAACCCTCT
1 TATGAAATTTTGATAACCTTCC
* **
93112 TATGAAATTTTGA-AAACTAAAC
1 TATGAAATTTTGATAACCT-TCC
*
93134 TATGAAATTTTGATATCC-TCC
1 TATGAAATTTTGATAACCTTCC
* *
93155 -CTGAAATTTTGATTA--TTCC
1 TATGAAATTTTGATAACCTTCC
* * *
93174 ATAATAAAAGTTTAATAACCTTCC
1 -T-ATGAAATTTTGATAACCTTCC
* * *
93198 --T--AA-TTTGGTAACCATAC
1 TATGAAATTTTGATAACCTTCC
93215 TATGAAATTTTGATAACCT
1 TATGAAATTTTGATAACCT
93234 CCCCAGAAAT
Statistics
Matches: 413, Mismatches: 127, Indels: 86
0.66 0.20 0.14
Matches are distributed among these distances:
16 13 0.03
17 10 0.02
18 2 0.00
19 4 0.01
20 13 0.03
21 31 0.08
22 258 0.62
23 54 0.13
24 8 0.02
25 20 0.05
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTTCC
Found at i:92969 original size:23 final size:23
Alignment explanation
Indices: 92914--93002 Score: 81
Period size: 23 Copynumber: 3.8 Consensus size: 23
92904 TTGATAATCA
* *
92914 CACTATAAAATTGTGAT-AACCT
1 CACTATAAAATTTTAATAAACCT
* * *
92936 CGCTATGAAATTTTAATAAATCT
1 CACTATAAAATTTTAATAAACCT
*
92959 TACTATAAAATTTTGATATAAACCT
1 CACTATAAAATTTT-A-ATAAACCT
* *
92984 CCCTATAAAATTTTGATAA
1 CACTATAAAATTTTAATAA
93003 CTTTCTTACA
Statistics
Matches: 52, Mismatches: 12, Indels: 5
0.75 0.17 0.07
Matches are distributed among these distances:
22 13 0.25
23 19 0.37
24 1 0.02
25 19 0.37
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.37
Consensus pattern (23 bp):
CACTATAAAATTTTAATAAACCT
Found at i:93001 original size:25 final size:24
Alignment explanation
Indices: 92914--92999 Score: 88
Period size: 25 Copynumber: 3.7 Consensus size: 24
92904 TTGATAATCA
*
92914 CACTATAAAATTGTG-AT-AACCT
1 CACTATAAAATTTTGAATAAACCT
* * *
92936 CGCTATGAAATTTT-AATAAATCT
1 CACTATAAAATTTTGAATAAACCT
*
92959 TACTATAAAATTTTGATATAAACCT
1 CACTATAAAATTTTGA-ATAAACCT
*
92984 CCCTATAAAATTTTGA
1 CACTATAAAATTTTGA
93000 TAACTTTCTT
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
22 13 0.26
23 15 0.30
24 1 0.02
25 21 0.42
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (24 bp):
CACTATAAAATTTTGAATAAACCT
Found at i:93298 original size:22 final size:22
Alignment explanation
Indices: 93273--93378 Score: 81
Period size: 22 Copynumber: 4.8 Consensus size: 22
93263 AATCACATTT
93273 TGAAAATTTGATAACCTCTTTA
1 TGAAAATTTGATAACCTCTTTA
* *
93295 TGAAATTTTGATAACCTCGTTA
1 TGAAAATTTGATAACCTCTTTA
* * * *
93317 T-AAAATTTTGTTGACCCCTCTA
1 TGAAAA-TTTGATAACCTCTTTA
* * *
93339 TG-AAATTCTGATAATCACATTA
1 TGAAAATT-TGATAACCTCTTTA
* *
93361 TGTAATTTTGATAACCTC
1 TGAAAATTTGATAACCTC
93379 GCTTTAAAAT
Statistics
Matches: 63, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
21 5 0.08
22 54 0.86
23 4 0.06
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (22 bp):
TGAAAATTTGATAACCTCTTTA
Found at i:93368 original size:44 final size:44
Alignment explanation
Indices: 93248--93396 Score: 138
Period size: 44 Copynumber: 3.4 Consensus size: 44
93238 AGAAATACCA
* * *
93248 CTATGAAATTTTTG-TAATCACATTTTGAAAATTTGATAACCTCT
1 CTATGAAA-TTTTGATAATCACATTATGAAATTTTGATAACCCCT
* * * * * * *
93292 TTATGAAATTTTGATAACCTCGTTATAAAATTTTGTTGACCCCT
1 CTATGAAATTTTGATAATCACATTATGAAATTTTGATAACCCCT
* * * *
93336 CTATGAAATTCTGATAATCACATTATGTAATTTTGATAACCTCG
1 CTATGAAATTTTGATAATCACATTATGAAATTTTGATAACCCCT
* *
93380 CTTTAAAATTTTGATAA
1 CTATGAAATTTTGATAA
93397 CAAGTTAACA
Statistics
Matches: 80, Mismatches: 24, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
43 5 0.06
44 75 0.94
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (44 bp):
CTATGAAATTTTGATAATCACATTATGAAATTTTGATAACCCCT
Found at i:93389 original size:22 final size:22
Alignment explanation
Indices: 93275--93397 Score: 69
Period size: 22 Copynumber: 5.6 Consensus size: 22
93265 TCACATTTTG
93275 AAAA-TTTGATAACCT--CTTT
1 AAAATTTTGATAACCTCGCTTT
93294 ATGAAATTTTGATAACCTCG-TTAT
1 A--AAATTTTGATAACCTCGCTT-T
* * * * *
93318 AAAATTTTGTTGACCCCTCTAT
1 AAAATTTTGATAACCTCGCTTT
* * *
93340 GAAATTCTGATAA--TCACATTAT
1 AAAATTTTGATAACCTCGC-TT-T
**
93362 GTAATTTTGATAACCTCGCTTT
1 AAAATTTTGATAACCTCGCTTT
93384 AAAATTTTGATAAC
1 AAAATTTTGATAAC
93398 AAGTTAACAA
Statistics
Matches: 76, Mismatches: 17, Indels: 19
0.68 0.15 0.17
Matches are distributed among these distances:
19 1 0.01
20 2 0.03
21 4 0.05
22 59 0.78
23 5 0.07
24 5 0.07
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (22 bp):
AAAATTTTGATAACCTCGCTTT
Found at i:93483 original size:22 final size:23
Alignment explanation
Indices: 93410--93509 Score: 86
Period size: 21 Copynumber: 4.5 Consensus size: 23
93400 GTTAACAACA
*
93410 CTATGAAATTTTGATAATCTTC-
1 CTATGAAATTTTGATAATCTACT
*
93432 CTAT-AAATTTTGATAATCTGATAT
1 CTATGAAATTTTGATAATCT-A-CT
*
93456 CTATGAAATTTCGATAAT-TACT
1 CTATGAAATTTTGATAATCTACT
* *
93478 CTATGAGA-TTTGATAACCT--T
1 CTATGAAATTTTGATAATCTACT
*
93498 CTATCAAATTTT
1 CTATGAAATTTT
93510 TGTTCTCCTT
Statistics
Matches: 63, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
20 7 0.11
21 25 0.40
22 13 0.21
23 1 0.02
24 5 0.08
25 12 0.19
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (23 bp):
CTATGAAATTTTGATAATCTACT
Found at i:93844 original size:23 final size:22
Alignment explanation
Indices: 93814--93868 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
93804 CAATAAAATT
*
93814 TTGATAACCAACACTATGAGATG
1 TTGATAACCAACA-TATGAGATA
* *
93837 TTGATAACCTACATATGATATA
1 TTGATAACCAACATATGAGATA
*
93859 TTAATAACCA
1 TTGATAACCA
93869 CGTTATGAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (22 bp):
TTGATAACCAACATATGAGATA
Found at i:93933 original size:22 final size:22
Alignment explanation
Indices: 93899--93954 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
93889 CCTCCATATG
* * *
93899 AATTGTTAGTAATCACACTCTGA
1 AATTGTGA-TAATCACACTATAA
*
93922 AATTTTGATAATCACACTATAA
1 AATTGTGATAATCACACTATAA
93944 AATTGTGATAA
1 AATTGTGATAA
93955 CCTCGCTATG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (22 bp):
AATTGTGATAATCACACTATAA
Found at i:93993 original size:23 final size:23
Alignment explanation
Indices: 93936--94024 Score: 72
Period size: 25 Copynumber: 3.8 Consensus size: 23
93926 TTGATAATCA
* *
93936 CACTATAAAATTGTGAT-AACCT
1 CACTATAAAATTTTAATAAACCT
* * * *
93958 CGCTATGACATTTTAATAAATCT
1 CACTATAAAATTTTAATAAACCT
*
93981 TACTATAAAATTTTGATATAAACCT
1 CACTATAAAATTTT-A-ATAAACCT
* *
94006 CCCTATAAAATTTTGATAA
1 CACTATAAAATTTTAATAA
94025 CTTTCTTACA
Statistics
Matches: 50, Mismatches: 14, Indels: 5
0.72 0.20 0.07
Matches are distributed among these distances:
22 12 0.24
23 18 0.36
24 1 0.02
25 19 0.38
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (23 bp):
CACTATAAAATTTTAATAAACCT
Found at i:94083 original size:22 final size:22
Alignment explanation
Indices: 94050--94189 Score: 117
Period size: 22 Copynumber: 6.5 Consensus size: 22
94040 TGATAACTAC
*
94050 AAATTTTAATAACCTCCCTATG
1 AAATTTTGATAACCTCCCTATG
** **
94072 ATTTTTTGATAACCTCATTATG
1 AAATTTTGATAACCTCCCTATG
** *
94094 AAATTTTCTTAATCTCCCTATG
1 AAATTTTGATAACCTCCCTATG
*
94116 AAATTTTGATAACC-CTCTTATG
1 AAATTTTGATAACCTC-CCTATG
* **
94138 AAATTTTGA-AAACTAAACTATG
1 AAATTTTGATAACCT-CCCTATG
*
94160 AAATTTTGATATCCTCCC--TG
1 AAATTTTGATAACCTCCCTATG
94180 AAATTTTGAT
1 AAATTTTGAT
94190 TATTCCATAA
Statistics
Matches: 90, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
20 12 0.13
21 4 0.04
22 71 0.79
23 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (22 bp):
AAATTTTGATAACCTCCCTATG
Done.