Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006202.1 Corchorus capsularis cultivar CVL-1 contig06221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4226

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--98
25
3.8
23
72
7
72
40
15
6
37
1.74
124--263
22
6.5
22
72
8
117
33
17
7
41
1.78
369--474
22
4.8
22
71
9
81
33
16
10
40
1.82
344--492
44
3.4
44
75
1
138
33
14
10
42
1.79
371--493
22
5.6
22
67
16
69
34
15
9
40
1.80
506--605
21
4.5
23
74
15
86
34
13
9
44
1.75
909--963
22
2.5
22
81
3
65
41
16
10
30
1.83
994--1049
22
2.5
22
82
2
67
41
12
10
35
1.78
1031--1119
25
3.8
23
72
7
72
40
15
6
37
1.74
1145--1262
22
5.5
22
71
6
89
33
17
7
40
1.78
1368--1492
22
5.7
22
72
14
71
33
15
11
40
1.82
1343--1491
44
3.4
44
75
1
138
33
14
10
41
1.80
1505--1583
22
3.5
24
83
13
96
32
12
10
44
1.76
1821--1885
30
2.1
30
82
2
76
47
4
18
29
1.68
1914--1957
2
22.0
2
86
9
63
47
0
4
47
1.22
1--1865
999
1.9
1002
93
2
3199
39
13
9
37
1.78
3691--3727
18
2.1
18
89
0
56
54
13
13
18
1.71

Tables:   1

The End!