Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006206.1 Corchorus capsularis cultivar CVL-1 contig06225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67019

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
548--596
19
2.6
19
96
0
89
16
30
32
20
1.94
1481--1540
29
2.1
29
96
0
111
28
8
21
41
1.82
5408--5508
31
3.3
30
79
5
123
33
24
23
17
1.96
19837--19889
21
2.5
21
93
0
88
28
11
20
39
1.87
38150--38174
1
25.0
1
100
0
50
0
0
0
100
0.00
43591--43694
52
2.0
52
98
0
199
35
7
17
39
1.78
43665--43820
77
2.0
77
100
0
312
41
15
15
28
1.87
43969--44449
166
2.9
163
83
5
601
38
14
15
30
1.88
51922--51949
2
14.0
2
100
0
56
50
0
0
50
1.00
57769--57844
36
2.1
36
100
0
152
47
11
18
22
1.81
62496--62584
44
2.0
44
97
0
169
31
7
22
38
1.83
62945--63025
36
2.2
38
84
8
105
44
3
4
46
1.42
64565--64594
6
5.0
6
100
0
60
50
0
33
16
1.46
64545--64594
12
4.2
12
81
0
55
42
0
42
16
1.47
64724--65357
138
4.6
138
93
1
1069
38
22
10
28
1.87

Tables:   1

The End!