Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006211.1 Corchorus capsularis cultivar CVL-1 contig06230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26045

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--48
1
46.0
1
100
0
92
0
0
0
100
0.00
6730--6758
2
14.5
2
100
0
58
51
48
0
0
1.00
14966--14991
1
26.0
1
100
0
52
0
0
0
100
0.00
16882--16957
27
2.8
27
84
7
100
46
23
14
15
1.83
18208--18342
41
3.3
41
86
0
180
45
10
19
25
1.82
18313--19025
37
19.6
37
84
5
859
45
8
20
25
1.79
18299--19013
220
3.3
217
84
6
901
45
8
20
25
1.79
18707--18806
30
3.1
30
73
17
101
42
9
25
24
1.83
19005--19282
41
7.3
38
82
12
304
45
11
18
24
1.82
19016--19245
41
5.9
41
86
10
327
46
11
19
22
1.81
19005--19282
154
1.8
151
89
2
439
45
11
18
24
1.82
19252--19343
36
2.5
35
84
10
107
50
13
14
22
1.77
19373--19532
37
4.3
37
91
0
266
42
8
23
25
1.81
19555--19651
37
2.6
37
85
6
144
37
13
22
26
1.91
19558--19672
36
3.2
36
80
6
133
40
12
20
26
1.88
21862--21900
6
6.7
6
88
5
62
84
2
0
12
0.72
21863--21903
11
3.6
11
84
15
57
82
2
0
14
0.76
21863--21900
17
2.2
17
95
0
67
84
2
0
13
0.73
21858--21921
23
2.9
22
72
23
53
78
4
6
10
1.08
22914--22939
10
2.6
10
100
0
52
7
15
11
65
1.46

Tables:   1

The End!