Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006214.1 Corchorus capsularis cultivar CVL-1 contig06233, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3836
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Found at i:169 original size:30 final size:30
Alignment explanation
Indices: 109--169 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
99 CATCGAGTAG
* * *
109 AGCTTTGTTTGTGCATAGCGCTGCCTAACA
1 AGCTTTGTTTGTGAACAGCGCTGCCGAACA
*
139 AGCTTTGTTTGTGAACAG-GACTGTCGAACA
1 AGCTTTGTTTGTGAACAGCG-CTGCCGAACA
169 A
1 A
170 TCTCATCGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (30 bp):
AGCTTTGTTTGTGAACAGCGCTGCCGAACA
Found at i:422 original size:110 final size:110
Alignment explanation
Indices: 239--455 Score: 240
Period size: 110 Copynumber: 2.0 Consensus size: 110
229 ATGAGCCTTT
* * * * ** * *
239 CGCTAAAAATGATGTTTTGCATACAACCGCTCAAAGTTGAGGTTATGGGCTTCTAGGAAAGTTTT
1 CGCTAAAAACGATGTGTTGCATACAACCGCGCAAAGTTGAGCTTATGCACTTCGAGGAAAGCTTT
** *
304 GTTCTGCATAGGGCTGTCCAAAAAGTTCATCTCACTCCAACAAAC
66 GTTCTGCATACCGCTGTCCAAAAAGCTCATCTCACTCCAACAAAC
* *
349 CGCTAAGAACGATGTGTTGCATACAACC-CGCAAAGTTGATGCTT-TGCACTTCGAGGAGAGCTT
1 CGCTAAAAACGATGTGTTGCATACAACCGCGCAAAGTTGA-GCTTATGCACTTCGAGGAAAGCTT
* * ** *
412 TGTTTGTGCATACCGCTGTCTATCAAGCTCATCTCATTCCAACA
65 TG-TTCTGCATACCGCTGTCCAAAAAGCTCATCTCACTCCAACA
456 CACGACTTTT
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
109 26 0.30
110 61 0.70
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (110 bp):
CGCTAAAAACGATGTGTTGCATACAACCGCGCAAAGTTGAGCTTATGCACTTCGAGGAAAGCTTT
GTTCTGCATACCGCTGTCCAAAAAGCTCATCTCACTCCAACAAAC
Found at i:1174 original size:428 final size:426
Alignment explanation
Indices: 138--1346 Score: 1782
Period size: 427 Copynumber: 2.8 Consensus size: 426
128 GCTGCCTAAC
* *
138 AAGCTTTGTTTGTGAAC-AGGACTGTCGAACAATCTCATCGCACTTCGACGCACGACATTTGAGC
1 AAGCTTTGTTTGTGCACAAGG-CTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAGC
*
202 ACTCGTTGCGCAAAAAATTCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACC
65 ACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACC
*
267 GCTCAAAGTTGAGGTTATGGGCTTCTAGGAAAGTTTTG-TTCTGCATAGGGCTGTCCAAAAAGTT
130 GCTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTT
331 CATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCAT-ACAACCCGCAAAGTTGATGCTTTG
195 CATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATCA-AACCCGCAAAGTTGATGCTTTG
* * **
395 CACTTCGAGGAGAGCTTTGTTTGTGCATACCGCTGTCTATCAAGCTCATCTCATTCCAACACACG
259 GACTTCGAGGAGAGCTTTGTTTGTGCATACCGCTGTCTAACAAGCTCATCTCACCCCAACACACG
* *
460 ACTTTTGAGCACTCGTTGCGCGAAAAAACGCATTCAGAAAGAGTTTTGCTAAGAACTATGTTTAG
324 ACTTTTGAGCACTCGTTGCGCGAAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAG
* * * *
525 CACAAAAACGCGCAAAGTTGAGGCTTTGGAATTCGTGA
389 CACAAAAACGCGCAAAATTGACGATTTGGAATTCGGGA
* * * * * *
563 AAGCATTGTTTCTGCACAGGGCTGTCCAACAA-CTCAGCGTAATTCGACGCACGACATTTGAGTC
1 AAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAG-C
* *
627 ACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATAGAACT
65 ACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACC
* * * * * *
692 GCTCAAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCT
130 GCTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTT
* *
757 CATCTCACTCCGACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAAAGTTGATGCTTTG
195 CATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGC-ATCAAACCCGCAAAGTTGATGCTTTG
* * * * ** *
822 GACTTCGAGGAGAGCTTTGTTTGTTCATAGCGCTGTCTAACGAGTTCATCTCACCCCTTCACATG
259 GACTTCGAGGAGAGCTTTGTTTGTGCATACCGCTGTCTAACAAGCTCATCTCACCCCAACACACG
* *
887 ACTTTTGAGCACTCGTTGTGCGGAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAG
324 ACTTTTGAGCACTCGTTGCGCGAAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAG
* * *
952 CACAAAAATGTGCAAAATTGACGATTTGGACTTCGAGGA
389 CACAAAAACGCGCAAAATTGACGATTTGGAATTCG-GGA
991 AAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAGCA
1 AAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAGCA
1056 CTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACCG
66 CTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACCG
1121 CTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTC
131 CTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTC
* *
1186 ATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATACAAACTCGCAAAGTTGAGGCTTTGG
196 ATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCAT-CAAACCCGCAAAGTTGATGCTTTGG
* * * * ** * * * * *** *
1251 ACTTCG-TGAAAGCTTTTTTTGTGCACAGGGTTGTCCAACAATCTCATCGCAATTCGACACACGA
260 ACTTCGAGGAGAGCTTTGTTTGTGCATACCGCTGTCTAACAAGCTCATCTCACCCCAACACACGA
* *
1315 CATTTGAGCACTCGTTGCGC-AAAAAATGCATC
325 CTTTTGAGCACTCGTTGCGCGAAAAAACGCATC
1347 TGGAATGAGC
Statistics
Matches: 695, Mismatches: 81, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
424 27 0.04
425 121 0.17
426 72 0.10
427 227 0.33
428 221 0.32
429 27 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (426 bp):
AAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAGCA
CTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACCG
CTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTC
ATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATCAAACCCGCAAAGTTGATGCTTTGGA
CTTCGAGGAGAGCTTTGTTTGTGCATACCGCTGTCTAACAAGCTCATCTCACCCCAACACACGAC
TTTTGAGCACTCGTTGCGCGAAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAGCA
CAAAAACGCGCAAAATTGACGATTTGGAATTCGGGA
Found at i:1421 original size:428 final size:427
Alignment explanation
Indices: 138--1462 Score: 1775
Period size: 428 Copynumber: 3.1 Consensus size: 427
128 GCTGCCTAAC
* *
138 AAGCTTTGTTTGTGAAC-AGGACTGTCGAACAATCTCATCGCACTTCGACGCACGACATTTGAGC
1 AAGCTTTGTTTGTGCACAAGG-CTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAGC
*
202 ACTCGTTGCGCAAAAAATTCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACC
65 ACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACC
*
267 GCTCAAAGTTGAGGTTATGGGCTTCTAGGAAAGTTTTG-TTCTGCATAGGGCTGTCCAAAAAGTT
130 GCTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTT
331 CATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATAC-AACCCGCAAAGTTGATGCTTTG
195 CATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATACAAACCCGCAAAGTTGATGCTTTG
* * * *
395 CACTTCGAGGAGAGCTTTGTTTGTGCATACCGCTGTCTATCAAGCTCATCTC-ATTCCAACACAC
260 GACTTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAATCTCATCTCAATT-CAACACAC
*
459 GACTTTTGAGCACTCGTTGCGCGAAAAAACGCAT-TCAGAAAGAGTTTTGCTAAGAACTATGTTT
324 GACTTTTGAGCACTCGTTGCGCGAAAAAACGCATCT-AGAAAGAGTTTCGCTAAGAACTATGTTT
* * *
523 AGCACAAAAAC-GCGCAAAGTTGAGGCTTTGGAATT-C-GTGA
388 AGCA-AAAAACTGCTCAAAGTTGA-GATTTGGACTTCCAG-GA
* * * * * *
563 AAGCATTGTTTCTGCACAGGGCTGTCCAACAA-CTCAGCGTAATTCGACGCACGACATTTGAGTC
1 AAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAG-C
* *
627 ACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATAGAACT
65 ACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACC
* * * * * *
692 GCTCAAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCT
130 GCTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTT
* *
757 CATCTCACTCCGACAAACCGCTAAGAACGATGTGTTGCA-ATCAAACGCGCAAAGTTGATGCTTT
195 CATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATA-CAAACCCGCAAAGTTGATGCTTT
* * *** **
821 GGACTTCGAGGAGAGCTTTGTTTGTTCATAGCGCTGTCTAACGAGT-TCATCTCACCCCTTCACA
259 GGACTTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAAC-AATCTCATCTCAATTCAACACA
* * * *
885 TGACTTTTGAGCACTCGTTGTGCGGAAAAACGCATCCAGAAAGAG-TTCTGCTAAGAACTATGTT
323 CGACTTTTGAGCACTCGTTGCGCGAAAAAACGCATCTAGAAAGAGTTTC-GCTAAGAACTATGTT
* *
949 TAGCACAAAAA-TG-TGCAAAATTGACGATTTGGACTTCGAGGA
387 TAGCA-AAAAACTGCT-CAAAGTTGA-GATTTGGACTTCCAGGA
991 AAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAGCA
1 AAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAGCA
1056 CTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACCG
66 CTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACCG
1121 CTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTC
131 CTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTC
* *
1186 ATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATACAAACTCGCAAAGTTGAGGCTTTGG
196 ATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATACAAACCCGCAAAGTTGATGCTTTGG
* * * * * * * * *
1251 ACTTCG-TGAAAGCTTTTTTTGTGCACAGGGTTGTCCAACAATCTCATCGCAATTCGACACACGA
261 ACTTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAATCTCATCTCAATTCAACACACGA
* * * * *
1315 CATTTGAGCACTCGTTGCGC-AAAAAATGCATCTGGAATGAGCCTTTCGCTAA-AAATGATGTTT
326 CTTTTGAGCACTCGTTGCGCGAAAAAACGCATCTAGAAAGAG--TTTCGCTAAGAACT-ATGTTT
* * * *
1378 TGCATAGAACTGCTCAAAGTTGAGATTTTGGGCTTCCAGGA
388 AGCAAAAAACTGCTCAAAGTTGAGA-TTTGGACTTCCAGGA
* * * * * *
1419 AAGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATCTCACT
1 AAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACT
1463 CCAACACACC
Statistics
Matches: 782, Mismatches: 95, Indels: 43
0.85 0.10 0.05
Matches are distributed among these distances:
424 27 0.03
425 122 0.16
426 84 0.11
427 219 0.28
428 297 0.38
429 33 0.04
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (427 bp):
AAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACTTCGACGCACGACATTTGAGCA
CTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACCG
CTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTC
ATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATACAAACCCGCAAAGTTGATGCTTTGG
ACTTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAATCTCATCTCAATTCAACACACGA
CTTTTGAGCACTCGTTGCGCGAAAAAACGCATCTAGAAAGAGTTTCGCTAAGAACTATGTTTAGC
AAAAAACTGCTCAAAGTTGAGATTTGGACTTCCAGGA
Found at i:1468 original size:269 final size:270
Alignment explanation
Indices: 976--1557 Score: 929
Period size: 269 Copynumber: 2.2 Consensus size: 270
966 AAATTGACGA
* *
976 TTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAAGGCTGTCCAACAATCTCATCGCACTTCGACG
1 TTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAGGGCTGTCCAACAATCTCATCGCACTTCGACA
1041 CACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATG
66 CACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATG
* * *
1106 TTTTGCATACAACCGCTCAAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGG
131 TTTTGCATACAACCGCTCAAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTCTGCATAGGG
*
1171 CTGTCCAAAAAGTTCATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATACAAACTCGCA
196 CTGTCCAAAAAGCTCATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATACAAACTCGCA
1236 AAGTTGAGGC
261 AAGTTGAGGC
* * * *
1246 TTTGGACTTCG-TGAAAGCTTTTTTTGTGCACAGGGTTGTCCAACAATCTCATCGCAATTCGACA
1 TTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAGGGCTGTCCAACAATCTCATCGCACTTCGACA
1310 CACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATG
66 CACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATG
* * *
1375 TTTTGCATAGAACTGCTCAAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGG
131 TTTTGCATACAACCGCTCAAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTCTGCATAGGG
* * *
1440 CTGTTCAAAAAGCTCATCTCACTCCAACACACCGCTAAGAACGATGTGTTGCA-ATCAAACGC-C
196 CTGTCCAAAAAGCTCATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATA-CAAACTCGC
*
1503 AAAGTTGAGGT
260 AAAGTTGAGGC
* * * *
1514 TTTGGGCTTCTAGGAAA-CTTTTGTTTCTGCATAGGGCTGTCCAA
1 TTTGGACTTCGAGGAAAGC-TTTGTTTGTGCACAGGGCTGTCCAA
1558 AAAGTTCATC
Statistics
Matches: 285, Mismatches: 24, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
268 22 0.08
269 252 0.88
270 11 0.04
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29
Consensus pattern (270 bp):
TTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAGGGCTGTCCAACAATCTCATCGCACTTCGACA
CACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATG
TTTTGCATACAACCGCTCAAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTCTGCATAGGG
CTGTCCAAAAAGCTCATCTCACTCCAACAAACCGCTAAGAACGATGTGTTGCATACAAACTCGCA
AAGTTGAGGC
Found at i:1529 original size:110 final size:111
Alignment explanation
Indices: 1392--1691 Score: 426
Period size: 110 Copynumber: 2.7 Consensus size: 111
1382 TAGAACTGCT
*
1392 CAAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCAT
1 CAAAGTTGAGGTTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCAT
*
1457 CTCACTCCAACACACCGCTAAGAACGATGTGTTGCAATCAAACGC-
66 CTCACTCCGACACACCGCTAAGAACGATGTGTTGCAATCAAACGCG
* * * *
1502 CAAAGTTGAGGTTTTGGGCTTCTAGGAAA-CTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTCA
1 CAAAGTTGAGGTTTTGGGCTTCCAGGAAAGC-TTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCA
*
1566 TCTCACTCCGACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCG
65 TCTCACTCCGACACACCGCTAAGAACGATGTGTTGCAATCAAACGCG
* * * * * * * *
1613 CAAAGTTGATGCTTTGGACTTCGAGGAGAGCTTTGTTTGTTCATAGCGCTG-TCTAACAAGCTCA
1 CAAAGTTGAGGTTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGGCTGTTC-AAAAAGCTCA
1677 TCTCACTCCGACACA
65 TCTCACTCCGACACA
1692 TGACTTTTGA
Statistics
Matches: 167, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
109 1 0.01
110 102 0.61
111 63 0.38
112 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (111 bp):
CAAAGTTGAGGTTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCAT
CTCACTCCGACACACCGCTAAGAACGATGTGTTGCAATCAAACGCG
Found at i:2106 original size:111 final size:111
Alignment explanation
Indices: 1899--2109 Score: 251
Period size: 111 Copynumber: 1.9 Consensus size: 111
1889 ATGAGCCTTT
* * * * * * * *
1899 CGCTAAAAATGATGTTTTGCATACAACCGCTCAAAGTTGAGGTTTTGGGCTACTAGGAAAGTTTT
1 CGCTAAAAACGATGTGTTGCATACAAACGCGCAAAGTTGAGGCTTTGGACTACGAGGAAAGCTTT
* *
1964 GTTTCTGCATAGGGCTGTCCAAAAAGTTCATCTCACTCCAACAAAC
66 GTTTCTGCATAGCGCTGTCCAAAAAGCTCATCTCACTCCAACAAAC
* * * * *
2010 CGCTAAGAACGATGTGTTGCATACAAACTCGCAAAGTTGATGCTTTGGACTTCGAGGAGAGCTTT
1 CGCTAAAAACGATGTGTTGCATACAAACGCGCAAAGTTGAGGCTTTGGACTACGAGGAAAGCTTT
* ** *
2075 GTTTGTGCATAGCGCTGTTTAATAAGCTCATCTCA
66 GTTTCTGCATAGCGCTGTCCAAAAAGCTCATCTCA
2110 TTCCGACACA
Statistics
Matches: 81, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
111 81 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (111 bp):
CGCTAAAAACGATGTGTTGCATACAAACGCGCAAAGTTGAGGCTTTGGACTACGAGGAAAGCTTT
GTTTCTGCATAGCGCTGTCCAAAAAGCTCATCTCACTCCAACAAAC
Found at i:2521 original size:112 final size:111
Alignment explanation
Indices: 2360--2651 Score: 343
Period size: 112 Copynumber: 2.6 Consensus size: 111
2350 AACTGCTCAA
* * * * * *
2360 AAAGTTGAGATTTTGGGCTTCCAAGAAAGCTTTT-TTTGTGCATACGGCTGTTCAAAAGGCTCAT
1 AAAGTTGAGGTTTTGGGCTTCCAGGAAA-ATTTTGTTTGTGCATAGGGCTGTCCAAAAAGCTCAT
* * *
2424 CTCACTTCAATACACCGCTAAGAACGATGTGTTGCAATCAAACGCGC
65 CTCACTCCAACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCGC
* * *
2471 AAAGTTTGAGGTTTTGGGCTTCTAGGAAAATTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTCAT
1 AAAG-TTGAGGTTTTGGGCTTCCAGGAAAATTTTGTTTGTGCATAGGGCTGTCCAAAAAGCTCAT
*
2536 CTCACTCCGACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCGC
65 CTCACTCCAACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCGC
* * * * * ** * * * *
2583 AAAGTTGATGCTTTGGACTTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGTTCATC
1 AAAGTTGAGGTTTTGGGCTTCCAGGAAAATTTTGTTTGTGCATAGGGCTGTCCAAAAAGCTCATC
2648 TCAC
66 TCAC
2652 CCCGACACAT
Statistics
Matches: 155, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
111 62 0.40
112 93 0.60
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (111 bp):
AAAGTTGAGGTTTTGGGCTTCCAGGAAAATTTTGTTTGTGCATAGGGCTGTCCAAAAAGCTCATC
TCACTCCAACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCGC
Found at i:2657 original size:111 final size:112
Alignment explanation
Indices: 2437--2658 Score: 329
Period size: 111 Copynumber: 2.0 Consensus size: 112
2427 ACTTCAATAC
* * * *
2437 ACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAAAGTTTGAGGTTTTGGGCTTCTAGGAAAAT
1 ACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAAAGTTTGAGGCTTTGGACTTCGAGGAAAAC
* *
2502 TTTGTTTCTGCATAGGGCTGTCCAAAAAGTTCATCTCACTCCGACAA
66 TTTGTTTCTGCATAGCGCTGTCCAAAAAGTTCATCTCACCCCGACAA
* * *
2549 ACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAAAG-TTGATGCTTTGGACTTCGAGGAGAGC
1 ACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAAAGTTTGAGGCTTTGGACTTCGAGGAAAAC
* * *
2613 TTTGTTTGTGCATAGCGCTGTCTAACAAGTTCATCTCACCCCGACA
66 TTTGTTTCTGCATAGCGCTGTCCAAAAAGTTCATCTCACCCCGACA
2659 CATGACTTTT
Statistics
Matches: 98, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
111 60 0.61
112 38 0.39
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (112 bp):
ACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAAAGTTTGAGGCTTTGGACTTCGAGGAAAAC
TTTGTTTCTGCATAGCGCTGTCCAAAAAGTTCATCTCACCCCGACAA
Found at i:2692 original size:969 final size:966
Alignment explanation
Indices: 1227--3515 Score: 3774
Period size: 969 Copynumber: 2.4 Consensus size: 966
1217 TGTTGCATAC
* * *
1227 AAACTCGCAAAGTTGAGGCTTTGGACTTCGTGAAAGCTTTTTTTGTGCACAGGGTTGTCCAACAA
1 AAACGCGCAAAGTTGAGGCTTTGGACTTCGTGAAAGCTTTATTTGTGCACAGGGCTGTCCAACAA
1292 TCTCATCGCAATTCGACACACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGAGC
66 TCTCATCGCAATTCGACACACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGAGC
1357 CTTTCGCTAAAAATGATGTTTTGCATAGAACTGCTCAAAGTTGAGATTTTGGGCTTCCAGGAAAG
131 CTTTCGCTAAAAATGATGTTTTGCATAGAACTGCTCAAAGTTGAGATTTTGGGCTTCCAGGAAAG
1422 CTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATCTCACTCCAACACACCGCTAAGAACGATGT
196 CTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATCTCACTCCAACACACCGCTAAGAACGATGT
*
1487 GTTGCAATCAAACGC-CAAAGTTGAGGTTTTGGGCTTCTAGGAAACTTTTGTTTCTGCATAGGGC
261 GTTGCAATCAAACGCGCAAAGTTGAGGTTTTGGGCTTCTAGGAAAATTTTGTTTCTGCATAGGGC
1551 TGTCCAAAAAGTTCATCTCACTCCGACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAA
326 TGTCCAAAAAGTTCATCTCACTCCGACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAA
*
1616 AGTTGATGCTTTGGACTTCGAGGAGAGCTTTGTTTGTTCATAGCGCTGTCTAACAAGCTCATCTC
391 AGTTGATGCTTTGGACTTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGCTCATCTC
* *
1681 ACTCCGACACATGACTTTTGAGCACTCGTTGCACGGAAAAACGCATCTAGAAAGAGTTCTGCTAA
456 ACCCCGACACATGACTTTTGAGCACTCGTTGCACGGAAAAACGCATCCAGAAAGAGTTCTGCTAA
1746 GAACTATGTTTAGCACAAAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTTTGT
521 GAACTATGTTTAGCACAAAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTTTGT
* * *
1811 GCACAGGACTGTCGAACAATCTCATCGCACTTCGACGCACGACATTTGAGCACTCGTTGCGCAAA
586 GCACAGGACTGTCCAACAATCTCATCGCACTTAGACGCACGACATTTGAGCACTCATTGCGCAAA
* * * *
1876 AATTTCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACCGCTCAAAGTTGAGG
651 AAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACAGCTCAAAGTTGAGA
* * *
1941 TTTTGGGCTACTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTCATCTCACTCCAAC
716 TTTTGGGCTACCAGGAAAGCTTTGTTTCTGCATAGGGCTGTCCAAAAAGCTCATCTCACTCCAAC
* * * *
2006 AAACCGCTAAGAACGATGTGTTGCATACAAACTCGCAAAGTTGATGCTTTGGACTTCGAGGAGAG
781 AAACCGCTAAGAACGATGTGTTGCAAACAAACGCACAAAGTTGATGCTTTCGACTTCGAGGAGAG
* * * *
2071 CTTTGTTTGTGCATAGCGCTGTTTAAT-AAGCTCATCTCATTCCGACACACGACTTTTGAGCACT
846 CTTTGTTTGTGCATACCGCTGTCT-ATCAAGCTCATCTCACTCCAACACACGACTTTTGAGCACT
2135 CGTTGCGCGAAAAAACGCATCCAGAAAGAGTTTTGCTAAGAACTATGAATAGCACAA
910 CGTTGCGCGAAAAAACGCATCCAGAAAGAGTTTTGCTAAGAACTATGAATAGCACAA
2192 AAACGCGCAAAGTTGAGGCTTTGGACTTCGTGAAAGCTTTATTTGTGCACAGGGCTGTCCAACAA
1 AAACGCGCAAAGTTGAGGCTTTGGACTTCGTGAAAGCTTTATTTGTGCACAGGGCTGTCCAACAA
* **
2257 TCTCATCGCAATTCGACACACGACATTTGAGCACTCGTTGCGCAAAAAATGCACCTAAAATGAGC
66 TCTCATCGCAATTCGACACACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGAGC
* * * * *
2322 CTTTTGTTAAAAATCATGATTTGCATAGAACTGCTCAAAAAGTTGAGATTTTGGGCTTCCAAGAA
131 CTTTCGCTAAAAATGATGTTTTGCATAGAACTGCTC--AAAGTTGAGATTTTGGGCTTCCAGGAA
* * * * *
2387 AGCTTTTTTTGTGCATACGGCTGTTCAAAAGGCTCATCTCACTTCAATACACCGCTAAGAACGAT
194 AGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATCTCACTCCAACACACCGCTAAGAACGAT
2452 GTGTTGCAATCAAACGCGCAAAGTTTGAGGTTTTGGGCTTCTAGGAAAATTTTGTTTCTGCATAG
259 GTGTTGCAATCAAACGCGCAAAG-TTGAGGTTTTGGGCTTCTAGGAAAATTTTGTTTCTGCATAG
2517 GGCTGTCCAAAAAGTTCATCTCACTCCGACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCG
323 GGCTGTCCAAAAAGTTCATCTCACTCCGACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCG
*
2582 CAAAGTTGATGCTTTGGACTTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGTTCAT
388 CAAAGTTGATGCTTTGGACTTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGCTCAT
**
2647 CTCACCCCGACACATGACTTTTGAGCACTCGTTGTGCGGAAAAACGCATCCAGAAAGAGTTCTGC
453 CTCACCCCGACACATGACTTTTGAGCACTCGTTGCACGGAAAAACGCATCCAGAAAGAGTTCTGC
2712 TAAGAACTATGTTTAGCACAAAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTT
518 TAAGAACTATGTTTAGCACAAAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTT
* *
2777 TGTGCACAGGGCTGTCCAACAATCTCATTGCACTTAGACGCACGACATTTGAGCACTCATTGCGC
583 TGTGCACAGGACTGTCCAACAATCTCATCGCACTTAGACGCACGACATTTGAGCACTCATTGCGC
* ** *
2842 AAAAAATGCATCTGGAATGAGGCTTTCGCTAAAAATGATGTTTTGCATTGAACAGCTTAAAGTTG
648 AAAAAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACAGCTCAAAGTTG
* * * *
2907 AGATTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATCTCAGTCC
713 AGATTTTGGGCTACCAGGAAAGCTTTGTTTCTGCATAGGGCTGTCCAAAAAGCTCATCTCACTCC
* * *
2972 AACACACCTCTAAGAACGATGTGTTGCAAACAAACGCACAAAGTTGATGGTTTCGACTTCGAGGA
778 AACAAACCGCTAAGAACGATGTGTTGCAAACAAACGCACAAAGTTGATGCTTTCGACTTCGAGGA
3037 GAGCTTTGTTTGTGCATACCGCTGTCTATCAAGCTCATCTCACTCCAACACACGACTTTTGAGCA
843 GAGCTTTGTTTGTGCATACCGCTGTCTATCAAGCTCATCTCACTCCAACACACGACTTTTGAGCA
* **
3102 CTCGTTGCGCGAAAAAACGCATTCAGAAAGAGTTTTGCTAAGAACTATGTTTAGCACAA
908 CTCGTTGCGCGAAAAAACGCATCCAGAAAGAGTTTTGCTAAGAACTATGAATAGCACAA
* * * *
3161 AAACGCGCAAAGTTGAGGCTTTGGAATTCGTGAAAGCATTGTTTCTGCACAGGGCTGTCCAACAA
1 AAACGCGCAAAGTTGAGGCTTTGGACTTCGTGAAAGCTTTATTTGTGCACAGGGCTGTCCAACAA
* * *
3226 TCTCAGCGTAATTCGACGCACGACATTTGAGTCACTCGTTGCGCAAAAAATGCATCTGGAATGGA
66 TCTCATCGCAATTCGACACACGACATTTGAG-CACTCGTTGCGCAAAAAATGCATCTGGAAT-GA
* * *
3291 GCCTTTCGCTAAAAATGATGTTTTGCATTGAACAGCTTAAAGTTGAGATTTTGGGCTTCCAGGAA
129 GCCTTTCGCTAAAAATGATGTTTTGCATAGAACTGCTCAAAGTTGAGATTTTGGGCTTCCAGGAA
*
3356 AGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATCTCACTCCAACACACCTCTAAGAACGAT
194 AGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATCTCACTCCAACACACCGCTAAGAACGAT
* * * * ** *
3421 GTGTTGCAAACAAACGCGCAAAGTTGATGG-TTTGGACTTCGAGGAGAGCTTTGTTTGTGCATAG
259 GTGTTGCAATCAAACGCGCAAAGTTGA-GGTTTTGGGCTTCTAGGAAAATTTTGTTTCTGCATAG
* * * * *
3485 CGCTATCTAACAAGCTCATCTCACTCCGACA
323 GGCTGTCCAAAAAGTTCATCTCACTCCGACA
3516 CACGCCTTTT
Statistics
Matches: 1223, Mismatches: 93, Indels: 13
0.92 0.07 0.01
Matches are distributed among these distances:
965 156 0.13
967 103 0.08
968 65 0.05
969 839 0.69
970 27 0.02
971 33 0.03
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (966 bp):
AAACGCGCAAAGTTGAGGCTTTGGACTTCGTGAAAGCTTTATTTGTGCACAGGGCTGTCCAACAA
TCTCATCGCAATTCGACACACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGAGC
CTTTCGCTAAAAATGATGTTTTGCATAGAACTGCTCAAAGTTGAGATTTTGGGCTTCCAGGAAAG
CTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATCTCACTCCAACACACCGCTAAGAACGATGT
GTTGCAATCAAACGCGCAAAGTTGAGGTTTTGGGCTTCTAGGAAAATTTTGTTTCTGCATAGGGC
TGTCCAAAAAGTTCATCTCACTCCGACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAA
AGTTGATGCTTTGGACTTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGCTCATCTC
ACCCCGACACATGACTTTTGAGCACTCGTTGCACGGAAAAACGCATCCAGAAAGAGTTCTGCTAA
GAACTATGTTTAGCACAAAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTTTGT
GCACAGGACTGTCCAACAATCTCATCGCACTTAGACGCACGACATTTGAGCACTCATTGCGCAAA
AAATGCATCTGGAATGAGCCTTTCGCTAAAAATGATGTTTTGCATACAACAGCTCAAAGTTGAGA
TTTTGGGCTACCAGGAAAGCTTTGTTTCTGCATAGGGCTGTCCAAAAAGCTCATCTCACTCCAAC
AAACCGCTAAGAACGATGTGTTGCAAACAAACGCACAAAGTTGATGCTTTCGACTTCGAGGAGAG
CTTTGTTTGTGCATACCGCTGTCTATCAAGCTCATCTCACTCCAACACACGACTTTTGAGCACTC
GTTGCGCGAAAAAACGCATCCAGAAAGAGTTTTGCTAAGAACTATGAATAGCACAA
Found at i:3448 original size:429 final size:428
Alignment explanation
Indices: 2471--3832 Score: 2204
Period size: 428 Copynumber: 3.2 Consensus size: 428
2461 TCAAACGCGC
* * ** *
2471 AAAGTTTGAGGTTTTGGGCTTCTAGGAAAATTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTCAT
1 AAAG-TTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTCTGCATAGGGCTGTCCAAAAAGCTCAT
* * * * *
2536 CTCACTCCGACAAACCGCTAAGAACGATGTGTTGCAATCAAACGCGCAAAGTTGATGCTTTGGAC
65 CTCACTCCAACACACCTCTAAGAACGATGTGTTGCAAACAAACGCGCAAAGTTGATGGTTTGGAC
* * *
2601 TTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGTTCATCTCACCCCGACACATGACT
130 TTCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGCTCATCTCACTCCGACACACGACT
*
2666 TTTGAGCACTCGTTGTGCGGAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAGCAC
195 TTTGAGCACTCGTTGTGCGAAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAGCAC
2731 AAAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAGGGCTGTCCAA
260 AAAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAGGGCTGTCCAA
*
2796 CAATCTCATTGCACTTAGACGCACGACATTTGAGCACTCATTGCGCAAAAAATGCATCTGGAATG
325 CAATCTCATTGCACTTAGACGCACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATG
*
2861 AGGCTTTCGCTAAAAATGATGTTTTGCATTGAACAGCTT
390 AGCCTTTCGCTAAAAATGATGTTTTGCATTGAACAGCTT
* *
2900 AAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATC
1 AAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTCTGCATAGGGCTGTCCAAAAAGCTCATC
* * *
2965 TCAGTCCAACACACCTCTAAGAACGATGTGTTGCAAACAAACGCACAAAGTTGATGGTTTCGACT
66 TCACTCCAACACACCTCTAAGAACGATGTGTTGCAAACAAACGCGCAAAGTTGATGGTTTGGACT
* * *
3030 TCGAGGAGAGCTTTGTTTGTGCATACCGCTGTCTATCAAGCTCATCTCACTCCAACACACGACTT
131 TCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGCTCATCTCACTCCGACACACGACTT
* * *
3095 TTGAGCACTCGTTGCGCGAAAAAACGCATTCAGAAAGAGTTTTGCTAAGAACTATGTTTAGCACA
196 TTGAGCACTCGTTGTGCGAAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAGCACA
* * * * * * * *
3160 AAAACGCGCAAAGTTGAGGCTTTGGAATTCG-TGAAAGCATTGTTTCTGCACAGGGCTGTCCAAC
261 AAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAGGGCTGTCCAAC
** * * *
3224 AATCTCAGCGTAATTCGACGCACGACATTTGAGTCACTCGTTGCGCAAAAAATGCATCTGGAATG
326 AATCTCATTGCACTTAGACGCACGACATTTGAG-CACTCGTTGCGCAAAAAATGCATCTGGAAT-
3289 GAGCCTTTCGCTAAAAATGATGTTTTGCATTGAACAGCTT
389 GAGCCTTTCGCTAAAAATGATGTTTTGCATTGAACAGCTT
* *
3329 AAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTGTGCATAGGGCTGTTCAAAAAGCTCATC
1 AAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTCTGCATAGGGCTGTCCAAAAAGCTCATC
3394 TCACTCCAACACACCTCTAAGAACGATGTGTTGCAAACAAACGCGCAAAGTTGATGGTTTGGACT
66 TCACTCCAACACACCTCTAAGAACGATGTGTTGCAAACAAACGCGCAAAGTTGATGGTTTGGACT
* *
3459 TCGAGGAGAGCTTTGTTTGTGCATAGCGCTATCTAACAAGCTCATCTCACTCCGACACACGCCTT
131 TCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGCTCATCTCACTCCGACACACGACTT
*
3524 TTGAGCTCTCGTTGTGCGAAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAGCACA
196 TTGAGCACTCGTTGTGCGAAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAGCACA
3589 AAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAGGGCTGTCCAAC
261 AAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAGGGCTGTCCAAC
*
3654 AATCTCATTGCACTTAGACGCACGACATTTGAGCACTCGTAGCGCAAAAAATGCATCTGGAATGA
326 AATCTCATTGCACTTAGACGCACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGA
** * *
3719 GCCTTTCGCTAAAAATGATGTTTTGCATACAACCGCTC
391 GCCTTTCGCTAAAAATGATGTTTTGCATTGAACAGCTT
* * * *
3757 AAAGTTGAGGTTTTGGGCTTCTAGGAAAGTTTTGTTTCTGCATAGGGCTGTCCAAAAAGTTCATC
1 AAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTCTGCATAGGGCTGTCCAAAAAGCTCATC
3822 TCACTCCAACA
66 TCACTCCAACA
3833 AACC
Statistics
Matches: 854, Mismatches: 76, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
427 58 0.07
428 392 0.46
429 346 0.41
430 58 0.07
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (428 bp):
AAAGTTGAGATTTTGGGCTTCCAGGAAAGCTTTGTTTCTGCATAGGGCTGTCCAAAAAGCTCATC
TCACTCCAACACACCTCTAAGAACGATGTGTTGCAAACAAACGCGCAAAGTTGATGGTTTGGACT
TCGAGGAGAGCTTTGTTTGTGCATAGCGCTGTCTAACAAGCTCATCTCACTCCGACACACGACTT
TTGAGCACTCGTTGTGCGAAAAAACGCATCCAGAAAGAGTTCTGCTAAGAACTATGTTTAGCACA
AAAATGTGCAAAATTGACGCTTTGGACTTCGAGGAAAGCTTTGTTTGTGCACAGGGCTGTCCAAC
AATCTCATTGCACTTAGACGCACGACATTTGAGCACTCGTTGCGCAAAAAATGCATCTGGAATGA
GCCTTTCGCTAAAAATGATGTTTTGCATTGAACAGCTT
Done.