Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006215.1 Corchorus capsularis cultivar CVL-1 contig06234, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4104
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.20


Found at i:2435 original size:8 final size:8

Alignment explanation


    Indices: 2422--2446  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

       2412 ACGGCGAGAC

                    
       2422 GCAAGTAG
          1 GCAAGTAG

                    
       2430 GCAAGTAG
          1 GCAAGTAG

                    
       2438 GCAAGTAG
          1 GCAAGTAG

             
       2446 G
          1 G

       2447 ACGAACAATA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.36, C:0.12, G:0.40, T:0.12


Consensus pattern (8 bp):   
GCAAGTAG
Done.