Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006217.1 Corchorus capsularis cultivar CVL-1 contig06236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14013
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:10226 original size:21 final size:21

Alignment explanation


    Indices: 10200--10242  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      10190 ATTTAGCAAA

                                 
      10200 TCCATCATATAATCGTCAGTG
          1 TCCATCATATAATCGTCAGTG

                                 
      10221 TCCATCATATAATCGTCAGTG
          1 TCCATCATATAATCGTCAGTG

             
      10242 T
          1 T

      10243 TACAAAATTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35


Consensus pattern (21 bp):   
TCCATCATATAATCGTCAGTG

Found at i:10797 original size:23 final size:21

Alignment explanation


    Indices: 10769--10823  Score: 65
    Period size: 23  Copynumber: 2.4  Consensus size: 21

      10759 ACAGACGATA

                                   
      10769 TTTATAATATTTATAAAATATAT
          1 TTTATAATA--TATAAAATATAT

                          *      
      10792 TTTATAATATATAATATATAT
          1 TTTATAATATATAAAATATAT

                       
      10813 TAATTATAATA
          1 T--TTATAATA

      10824 AATTATGATT


Statistics
Matches: 29,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  21   12  0.41
  23   17  0.59

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (21 bp):   
TTTATAATATATAAAATATAT
Done.