Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006220.1 Corchorus capsularis cultivar CVL-1 contig06239, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3779
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25


Found at i:2666 original size:13 final size:13

Alignment explanation


    Indices: 2648--2673  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2638 AGTTCAGAAG

                         
       2648 TTCTTCATGAATA
          1 TTCTTCATGAATA

                         
       2661 TTCTTCATGAATA
          1 TTCTTCATGAATA

       2674 ATTGATAAAC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46


Consensus pattern (13 bp):   
TTCTTCATGAATA
Done.