Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006226.1 Corchorus capsularis cultivar CVL-1 contig06245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66568

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3375--3413
20
2.0
20
89
0
60
35
15
20
28
1.93
4161--4187
14
1.9
14
100
0
54
14
25
14
44
1.84
4610--4677
8
8.6
8
77
9
61
32
5
0
61
1.20
4610--4662
15
3.4
15
89
5
70
30
3
0
66
1.10
5641--6093
225
2.0
225
96
0
825
27
17
20
33
1.95
6465--6503
17
2.2
18
86
13
55
38
0
12
48
1.42
6685--6716
2
16.0
2
100
0
64
50
0
0
50
1.00
13390--13453
22
2.9
22
80
0
74
34
9
14
42
1.77
14866--14942
30
2.6
30
91
4
120
54
6
1
37
1.35
15349--15426
38
2.0
39
97
2
149
34
5
25
34
1.78
15642--15710
26
2.7
26
95
2
122
17
11
11
59
1.61
24912--24938
12
2.2
12
100
0
54
37
7
7
48
1.59
25134--25174
17
2.4
17
95
0
73
19
17
26
36
1.94
29825--29852
14
2.0
14
100
0
56
7
35
14
42
1.73
34998--35055
26
2.2
26
90
0
98
36
17
3
43
1.66
53269--53305
2
18.5
2
100
0
74
51
0
48
0
1.00
55503--55566
18
3.6
17
76
15
67
7
9
0
82
0.83
55516--55566
13
4.2
13
75
14
63
5
9
0
84
0.78
59172--59207
18
2.0
18
94
0
63
33
8
16
41
1.78
61303--61376
34
2.1
35
80
5
87
17
33
29
18
1.94
61304--61564
112
2.3
112
84
4
332
19
28
30
21
1.98
61346--61807
189
2.4
189
87
0
636
21
28
28
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61647--61808
78
2.1
78
82
6
195
20
29
28
21
1.98
63743--63780
19
2.0
19
85
10
51
52
0
5
42
1.24
65389--65423
16
2.1
18
89
10
56
48
0
8
42
1.33
65723--65795
29
2.8
27
70
21
75
8
42
6
42
1.61

Tables:   1

The End!