Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006228.1 Corchorus capsularis cultivar CVL-1 contig06247, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50483

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3120--3221
51
2.0
51
98
0
195
38
11
18
31
1.87
3841--5412
330
4.8
329
77
8
1458
36
14
14
34
1.87
3885--5412
653
2.3
641
80
8
1428
36
14
14
34
1.87
7534--7696
78
2.1
78
79
8
179
34
20
17
26
1.95
9950--10677
328
2.2
324
79
7
761
37
15
13
34
1.86
14142--14182
2
20.0
2
85
14
57
46
2
2
48
1.28
14785--14817
3
11.0
3
100
0
66
33
0
0
66
0.92
21057--21081
12
2.1
12
100
0
50
28
40
24
8
1.83
25680--25719
12
3.2
12
86
6
62
37
15
20
27
1.92
27133--27168
10
3.6
10
100
0
72
30
8
22
38
1.83
35744--35768
12
2.1
12
100
0
50
32
16
0
52
1.44
36830--36855
2
13.0
2
100
0
52
50
0
0
50
1.00
45936--45960
2
12.5
2
100
0
50
52
0
0
48
1.00
46986--47050
31
2.1
31
100
0
130
41
23
15
20
1.89
47447--47495
3
16.0
3
95
4
89
65
0
0
34
0.93
49576--49604
5
6.0
5
92
8
51
79
0
20
0
0.74
49576--49604
14
2.0
15
93
6
51
79
0
20
0
0.74

Tables:   1

The End!