Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000623.1 Corchorus capsularis cultivar CVL-1 contig00623, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 916

Length: 1527
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28


Found at i:282 original size:51 final size:51

Alignment explanation


    Indices: 213--313  Score: 184
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        203 ACTAATATAA

                   *                                           
        213 AATACAATTCATGAATTTACATTTTCTAACATTGACACCAGTGTCACTAAC
          1 AATACAAATCATGAATTTACATTTTCTAACATTGACACCAGTGTCACTAAC

                        *                                     
        264 AATACAAATCATTAATTTACATTTTCTAACATTGACACCAGTGTCACTAA
          1 AATACAAATCATGAATTTACATTTTCTAACATTGACACCAGTGTCACTAA

        314 TAATTGGAGT


Statistics
Matches: 48,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  51   48  1.00

ACGTcount: A:0.39, C:0.21, G:0.07, T:0.34


Consensus pattern (51 bp):   
AATACAAATCATGAATTTACATTTTCTAACATTGACACCAGTGTCACTAAC
Done.