Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006230.1 Corchorus capsularis cultivar CVL-1 contig06249, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17773

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1823--1859
15
2.5
15
95
0
65
8
27
18
45
1.77
3310--3346
6
6.3
6
90
3
58
54
10
0
35
1.36
4681--4739
19
2.9
21
73
21
61
35
18
3
42
1.67
4709--4740
11
2.9
11
90
0
55
43
18
0
37
1.51
4681--4740
22
2.9
22
76
19
65
36
18
3
41
1.67
5286--5351
31
2.2
29
81
10
71
19
25
16
37
1.93
5396--5458
31
2.0
31
90
0
99
19
25
19
36
1.94
10851--10932
42
2.0
42
95
0
146
37
20
6
35
1.78
12915--13008
45
2.2
44
86
7
131
40
21
4
34
1.73
13487--13524
15
2.5
15
95
0
67
10
0
76
13
1.02
13949--13997
19
2.5
20
83
9
66
61
0
0
38
0.96

Tables:   1

The End!