Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006247.1 Corchorus capsularis cultivar CVL-1 contig06266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55554

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9438--9551
58
2.0
58
86
6
160
35
13
21
29
1.92
12156--12220
32
2.1
32
94
2
114
26
9
16
47
1.77
12476--12506
2
15.5
2
93
0
53
48
3
0
48
1.17
15238--15279
2
21.5
2
80
4
50
54
2
0
42
1.13
15238--15274
10
3.7
10
88
0
56
56
2
0
40
1.13
18076--18112
19
2.0
18
89
5
56
32
21
5
40
1.76
24321--24356
19
1.9
18
88
5
54
44
2
0
52
1.15
25425--25454
3
10.0
3
100
0
60
66
0
0
33
0.92
27316--27345
3
10.0
3
100
0
60
66
0
0
33
0.92
28390--28434
17
2.6
17
76
13
56
22
4
13
60
1.51
29066--29175
54
2.0
54
100
0
220
34
7
7
50
1.58
29072--29159
28
3.2
28
62
12
74
35
5
5
53
1.48
32198--32292
45
2.1
45
98
0
181
35
15
21
27
1.94
32305--32361
19
3.1
19
75
10
73
54
5
14
26
1.61
32294--32348
17
3.1
17
72
10
56
50
5
18
25
1.67
35937--36049
55
2.1
55
98
0
217
56
14
12
16
1.67
37436--37462
5
5.4
5
100
0
54
0
18
0
81
0.69

Tables:   1

The End!