Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006253.1 Corchorus capsularis cultivar CVL-1 contig06272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3432
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:1409 original size:20 final size:20

Alignment explanation


    Indices: 1370--1408  Score: 62
    Period size: 19  Copynumber: 2.0  Consensus size: 20

       1360 AATATACAAC

                                
       1370 GTAAAAAGTTAAAGAAAAAA
          1 GTAAAAAGTTAAAGAAAAAA

                *               
       1390 GTAATAAGTT-AAGAAAAAA
          1 GTAAAAAGTTAAAGAAAAAA

       1409 AAAATGTAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19    9  0.50
  20    9  0.50

ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18


Consensus pattern (20 bp):   
GTAAAAAGTTAAAGAAAAAA
Done.