Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006259.1 Corchorus capsularis cultivar CVL-1 contig06278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39833

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104--143
21
1.9
21
100
0
80
10
0
20
70
1.16
1139--1191
2
27.0
2
81
11
65
47
3
1
47
1.31
6282--6359
39
2.0
39
94
0
138
28
23
7
41
1.82
6548--7080
107
5.0
107
93
0
906
28
15
20
35
1.93
14382--14430
21
2.3
21
85
0
62
10
32
28
28
1.90
20210--20258
21
2.3
21
82
6
55
14
28
16
40
1.87
23590--23619
15
1.9
16
93
6
53
0
20
0
80
0.72
24638--24756
36
3.4
36
80
13
158
27
17
7
47
1.75
24774--24896
33
3.7
32
76
19
117
27
20
9
42
1.83
24778--24863
31
2.7
31
81
15
104
30
19
9
40
1.83
24889--24957
11
6.1
11
83
6
84
10
20
8
60
1.54
24889--24958
22
3.0
24
83
8
99
10
20
8
61
1.53
25030--25317
107
2.7
107
96
0
540
28
10
11
49
1.72
25102--25158
20
3.1
20
65
29
54
29
8
10
50
1.67
25013--25314
71
4.2
72
93
1
518
28
10
11
48
1.73
25157--25222
21
3.4
21
64
30
56
25
15
9
50
1.73
25209--25265
20
3.1
20
65
29
54
29
8
10
50
1.67
25013--25317
36
8.5
36
94
1
515
28
10
11
49
1.73
25348--25579
34
6.4
37
78
11
191
25
21
7
44
1.79
25319--25579
74
3.6
74
86
5
336
24
22
8
44
1.80
25374--25563
34
5.4
34
81
9
236
26
20
8
44
1.80
36164--36203
21
2.0
21
85
5
55
27
22
5
45
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38346--38386
21
1.9
22
85
5
57
19
24
12
43
1.85

Tables:   1

The End!