Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006266.1 Corchorus capsularis cultivar CVL-1 contig06285, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13801
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:2606 original size:23 final size:24

Alignment explanation


    Indices: 2557--2607  Score: 66
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       2547 TTCCATATCG

                 *  *         **    
       2557 AAATATCAGTTGAAAAAATCATAA
          1 AAATAGCAATTGAAAAAAGAATAA

                                    
       2581 AAATAGCAATTGAAAAAAGAATAA
          1 AAATAGCAATTGAAAAAAGAATAA

               
       2605 AAA
          1 AAA

       2608 AAAATGCCGA


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.65, C:0.06, G:0.10, T:0.20


Consensus pattern (24 bp):   
AAATAGCAATTGAAAAAAGAATAA

Found at i:2710 original size:42 final size:42

Alignment explanation


    Indices: 2659--2738  Score: 151
    Period size: 42  Copynumber: 1.9  Consensus size: 42

       2649 GGAGGAAAAT

                                                      
       2659 CCTACTAAAAAATAAGAGGAGACGCCGCTTACTACTAATCCA
          1 CCTACTAAAAAATAAGAGGAGACGCCGCTTACTACTAATCCA

                               *                  
       2701 CCTACTAAAAAATAAGAGGGGACGCCGCTTACTACTAA
          1 CCTACTAAAAAATAAGAGGAGACGCCGCTTACTACTAA

       2739 AATCCCGGTT


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  42   37  1.00

ACGTcount: A:0.40, C:0.25, G:0.16, T:0.19


Consensus pattern (42 bp):   
CCTACTAAAAAATAAGAGGAGACGCCGCTTACTACTAATCCA
Done.