Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006267.1 Corchorus capsularis cultivar CVL-1 contig06286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36


Found at i:500 original size:12 final size:12

Alignment explanation


    Indices: 483--507  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        473 TGTGATCATT

                        
        483 ACCCAATTACTA
          1 ACCCAATTACTA

                        
        495 ACCCAATTACTA
          1 ACCCAATTACTA

             
        507 A
          1 A

        508 AAATTTTACC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24


Consensus pattern (12 bp):   
ACCCAATTACTA
Done.