Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006269.1 Corchorus capsularis cultivar CVL-1 contig06288, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2314
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:554 original size:18 final size:18

Alignment explanation


    Indices: 493--584  Score: 82
    Period size: 18  Copynumber: 5.2  Consensus size: 18

        483 GTCACGATCG

                              
        493 ATATCGTCACTATCATCA
          1 ATATCGTCACTATCATCA

               *              
        511 ATAGCGTCACTATCATCA
          1 ATATCGTCACTATCATCA

               *        *    *
        529 ATAACGTCACTAGCATCC
          1 ATATCGTCACTATCATCA

             *          **      
        547 ACATCGTCA-TAAAATTCTA
          1 ATATCGTCACTATCA-TC-A

                              
        566 A-ATCGTCACTATCAT-A
          1 ATATCGTCACTATCATCA

               
        582 ATA
          1 ATA

        585 AACATCGTCA


Statistics
Matches: 59,  Mismatches: 11, Indels: 9
        0.75            0.14        0.11

Matches are distributed among these distances:
  16    2  0.03
  17    4  0.07
  18   49  0.83
  19    4  0.07

ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29


Consensus pattern (18 bp):   
ATATCGTCACTATCATCA
Done.