Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006276.1 Corchorus capsularis cultivar CVL-1 contig06295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16265
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36


Found at i:835 original size:2 final size:2

Alignment explanation


    Indices: 824--858  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

        814 ATTCCTACCA

                                                                 
        824 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        859 GAGGGAAAGA


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   31  0.97

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
AT

Done.