genome.fa.s6279.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006279.1 Corchorus capsularis cultivar CVL-1 contig06298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99559

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428--466	15	2.5	16	87	4	53	53	2	2	41	1.28
686--710	2	12.5	2	100	0	50	48	0	0	52	1.00
3989--4013	2	12.5	2	100	0	50	48	0	0	52	1.00
11754--11793	20	2.0	20	95	0	71	27	15	17	40	1.89
12036--12081	24	1.9	24	90	0	74	32	21	15	30	1.94
15097--15122	12	2.2	12	100	0	52	30	0	38	30	1.58
15071--15218	42	3.4	42	64	14	111	32	23	21	22	1.98
15185--15210	12	2.2	12	100	0	52	30	0	38	30	1.58
15073--15248	88	2.0	88	100	0	352	34	23	20	21	1.97
25519--25543	9	2.8	9	100	0	50	0	44	0	56	0.99
31587--31624	19	2.0	19	100	0	76	42	10	15	31	1.81
31717--31770	25	2.1	25	89	3	81	50	5	7	37	1.54
35564--35661	48	2.0	48	96	0	178	31	10	23	34	1.88
38901--39037	60	2.3	59	80	6	152	31	16	15	37	1.89
45192--45249	23	2.5	23	88	5	82	46	27	8	17	1.77
47679--47826	76	1.9	76	86	0	206	40	4	14	40	1.65
54310--54375	31	2.2	31	88	2	98	25	7	30	36	1.84
70543--70582	12	3.2	13	86	10	57	62	2	2	32	1.22
71574--71654	40	2.0	40	87	0	117	29	12	16	41	1.84
71830--71862	13	2.5	13	85	14	50	24	0	0	75	0.80
71830--71862	6	5.0	7	85	14	52	24	0	0	75	0.80
76809--76934	12	10.5	12	78	0	117	13	20	39	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76809--76934	36	3.5	36	90	0	180	13	20	39	26	1.90
82055--82092	2	19.5	2	94	5	69	50	0	0	50	1.00
96345--96373	14	2.1	14	100	0	58	27	37	20	13	1.91

Tables:   1

The End!