Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000628.1 Corchorus capsularis cultivar CVL-1 contig00628, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39190

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5380--5412
2
17.0
2
93
6
59
48
0
0
51
1.00
11844--11874
2
15.5
2
100
0
62
51
0
0
48
1.00
15009--15099
42
2.2
41
86
3
121
41
18
4
35
1.71
17372--17448
21
3.7
21
92
0
136
14
32
3
49
1.61
22435--22490
28
2.0
29
89
3
87
25
16
21
37
1.93
24193--24248
27
2.1
27
86
0
76
32
12
16
39
1.85
24510--24577
29
2.4
28
85
9
86
42
7
11
38
1.69
26987--27039
2
27.5
2
78
14
58
50
1
0
47
1.12
26978--27039
31
1.9
33
87
6
92
51
1
0
46
1.10
32092--32148
2
28.5
2
100
0
114
50
49
0
0
1.00
32533--33241
380
1.9
380
97
0
1337
33
14
19
32
1.92
34850--34932
27
3.1
27
85
0
112
30
7
36
26
1.83
35030--35054
13
1.9
13
100
0
50
24
48
0
28
1.52
36374--36430
27
2.1
28
86
3
80
8
21
1
68
1.26

Tables:   1

The End!