Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006280.1 Corchorus capsularis cultivar CVL-1 contig06299, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28142
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:4824 original size:46 final size:46
Alignment explanation
Indices: 4757--4849 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
4747 GAACTTTAAT
4757 TATTGTTTAAGATTATATATAAAATTTCTATATTTATATGTATACA
1 TATTGTTTAAGATTATATATAAAATTTCTATATTTATATGTATACA
4803 TATTGTTTAAGATTATATATAAAATTTCTATATTTATATGTATACA
1 TATTGTTTAAGATTATATATAAAATTTCTATATTTATATGTATACA
4849 T
1 T
4850 TAGTTTTACC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (46 bp):
TATTGTTTAAGATTATATATAAAATTTCTATATTTATATGTATACA
Found at i:7817 original size:2 final size:2
Alignment explanation
Indices: 7810--7840 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7800 TTTTTCTGTC
7810 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7841 AACCTAGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9646 original size:435 final size:435
Alignment explanation
Indices: 8836--9700 Score: 1712
Period size: 435 Copynumber: 2.0 Consensus size: 435
8826 ATAGTGCAAT
8836 CTTGTTGAGTCTTTCTGATGAGGTTTTGAGAGAGGTTGTCGCGGAGAAAGATGCTGCAAGTTTGT
1 CTTGTTGAGTCTTTCTGATGAGGTTTTGAGAGAGGTTGTCGCGGAGAAAGATGCTGCAAGTTTGT
8901 GGAAGGCGCTTGATGGCAGAAGTCATTGATTAATCGGTTGTTCCAGAAGCAGCGCCTGTACACAT
66 GGAAGGCGCTTGATGGCAGAAGTCATTGATTAATCGGTTGTTCCAGAAGCAGCGCCTGTACACAT
8966 TCAAGATGGCAGAAAATACACCAATAAAAGAACATTTTGATAGCTTCAATCGGATTATTCTTGAT
131 TCAAGATGGCAGAAAATACACCAATAAAAGAACATTTTGATAGCTTCAATCGGATTATTCTTGAT
*
9031 CTTGGTGGAGTTGGAGTTAAGATAGAAGATGAGGATTTGGCGCTGATTCTCCTATGTTCGTTGCC
196 CTTGGTGGAGTTGGAGTCAAGATAGAAGATGAGGATTTGGCGCTGATTCTCCTATGTTCGTTGCC
9096 TAGGTCGTTTCAGAATTTTCGGGATACCATGCTGTATGGTAGAGACACGATTGCTATGAAGGATG
261 TAGGTCGTTTCAGAATTTTCGGGATACCATGCTGTATGGTAGAGACACGATTGCTATGAAGGATG
9161 TTAAAGACGCTTTGCTTTCAAAAGAACTGCAGAATGAGGTTTCAGCAGATGTAGATGGTGAAGCG
326 TTAAAGACGCTTTGCTTTCAAAAGAACTGCAGAATGAGGTTTCAGCAGATGTAGATGGTGAAGCG
9226 GGTTTAATTGTTACACGAGGCAGAAACAAGGAGAAAAGCAAGCGG
391 GGTTTAATTGTTACACGAGGCAGAAACAAGGAGAAAAGCAAGCGG
9271 CTTGTTGAGTCTTTCTGATGAGGTTTTGAGAGAGGTTGTCGCGGAGAAAGATGCTGCAAGTTTGT
1 CTTGTTGAGTCTTTCTGATGAGGTTTTGAGAGAGGTTGTCGCGGAGAAAGATGCTGCAAGTTTGT
9336 GGAAGGCGCTTGATGGCAGAAGTCATTGATTAATCGGTTGTTCCAGAAGCAGCGCCTGTACACAT
66 GGAAGGCGCTTGATGGCAGAAGTCATTGATTAATCGGTTGTTCCAGAAGCAGCGCCTGTACACAT
9401 TCAAGATGGCAGAAAATACACCAATAAAAGAACATTTTGATAGCTTCAATCGGATTATTCTTGAT
131 TCAAGATGGCAGAAAATACACCAATAAAAGAACATTTTGATAGCTTCAATCGGATTATTCTTGAT
*
9466 CTTGGTGGAGTTGGAGTCAAGATAGAAGATGAGGATTTGGCGCTGATTCTCCTATGTTTGTTGCC
196 CTTGGTGGAGTTGGAGTCAAGATAGAAGATGAGGATTTGGCGCTGATTCTCCTATGTTCGTTGCC
9531 TAGGTCGTTTCAGAATTTTCGGGATACCATGCTGTATGGTAGAGACACGATTGCTATGAAGGATG
261 TAGGTCGTTTCAGAATTTTCGGGATACCATGCTGTATGGTAGAGACACGATTGCTATGAAGGATG
9596 TTAAAGACGCTTTGCTTTCAAAAGAACTGCAGAATGAGGTTTCAGCAGATGTAGATGGTGAAGCG
326 TTAAAGACGCTTTGCTTTCAAAAGAACTGCAGAATGAGGTTTCAGCAGATGTAGATGGTGAAGCG
9661 GGTTTAATTGTTACACGAGGCAGAAACAAGGAGAAAAGCA
391 GGTTTAATTGTTACACGAGGCAGAAACAAGGAGAAAAGCA
9701 GCGACATTGC
Statistics
Matches: 428, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
435 428 1.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (435 bp):
CTTGTTGAGTCTTTCTGATGAGGTTTTGAGAGAGGTTGTCGCGGAGAAAGATGCTGCAAGTTTGT
GGAAGGCGCTTGATGGCAGAAGTCATTGATTAATCGGTTGTTCCAGAAGCAGCGCCTGTACACAT
TCAAGATGGCAGAAAATACACCAATAAAAGAACATTTTGATAGCTTCAATCGGATTATTCTTGAT
CTTGGTGGAGTTGGAGTCAAGATAGAAGATGAGGATTTGGCGCTGATTCTCCTATGTTCGTTGCC
TAGGTCGTTTCAGAATTTTCGGGATACCATGCTGTATGGTAGAGACACGATTGCTATGAAGGATG
TTAAAGACGCTTTGCTTTCAAAAGAACTGCAGAATGAGGTTTCAGCAGATGTAGATGGTGAAGCG
GGTTTAATTGTTACACGAGGCAGAAACAAGGAGAAAAGCAAGCGG
Found at i:14397 original size:36 final size:36
Alignment explanation
Indices: 14350--14422 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
14340 AATTGCCCTC
*
14350 TAATTTTTCCATGCCTCTTTGCTGCGTGAACAACAT
1 TAATTTTTCCATGCCTCCTTGCTGCGTGAACAACAT
14386 TAATTTTTCCATGCCTCCTTGCTGCGTGAACAACAT
1 TAATTTTTCCATGCCTCCTTGCTGCGTGAACAACAT
14422 T
1 T
14423 TTGGGGAAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (36 bp):
TAATTTTTCCATGCCTCCTTGCTGCGTGAACAACAT
Found at i:23153 original size:979 final size:968
Alignment explanation
Indices: 20758--27620 Score: 6179
Period size: 979 Copynumber: 7.0 Consensus size: 968
20748 AAATTATTCT
* ** *
20758 GATTTAATTTA-AAATTAATTCAGTAAAAAATGAAAAAATAATATTAGAATCGTGAAAGACCCAT
1 GATTTAA-TTAGAAATTAATTCAGAAAAAAATGAAAAAACGATATTAGAAGCGTGAAA-ACCCAT
* * *
20822 CAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGTGGCAAAAAAATCATAAAAAAATT
64 CAATCTTTTTTGAGATGAATTATATATTTTTCTGATTATTGTGGCAAAAAATTCATAAAAAATTT
* * *
20887 TTCGAGTCAGTTTTTAGCCGAAACCGTGTACTAATCATCACGGTTTTTGGGCTAAAAACGCGTTT
129 TTTGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTT
*
20952 CAGGGTCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACTAATTGGAATAT-CAATATTCATC
194 CA-GGTCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACT-ATTTGAATATACAATATTCATC
* * *
21016 TAACAAAATCCCAGCCACGTTGGATTTAAGGATTTGCTTTTACGAGCATCTGAATCTTGTTTCGA
257 TAACAAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
*
21081 TTTAATTCGAAATAAATTCGGACAAAAAATGGGAAAACGATATTAGAAGCGTGGAAAACCCTTAA
322 TTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATATTAGAAGCGTGGAAAACCCTTAA
21146 ACTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGCAAAAAAATTGAGGTAAACTTTT
387 ACTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGC-AAAAAATTGAGGTAAACTTTT
*
21211 TCGGGTCAGTGATTTCAAAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTTTTGCTAA
451 TCGGGTCAG-G--TT-----TTTTAGCCGAAATCGTGTACTAACCATCAC-GGTTTTTTTGCTAA
* * * *
21276 AAACGCG-TTCTGGGCCTTGACTCAGTTTTGCATGATTTTTGGCGTAAAGACTTC-TTAAAATAT
507 AAACGCGTTTCTGGGCC-CGACTCAGTTTTGCATGATTTTTGCCATAAAGAC-TCATTGAAATAT
* * * * ** * *
21339 CTATATTCATCAAACCAAATCTCAGCCAAATTAGAAATAAAGA-TTCTTTTTACGAGCATCTGAA
570 CAATATTCATCTAACAAAATCTCAGCC-AATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAA
* * * *
21403 TATTGTTTCGATTTAATTTGAAATTAATTC--A-GAAAAAATGAAAAAACGATATTAGAAGCGTG
634 TCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAAATGAAAAAACGATATTAGAAGCGTG
* * * * * * * * *
21465 AAAGGGCCATCAATCTTTTTTGAGATGAATTATGTA-TCTTTCTGATTATTGTGGC-AAAAAATT
699 AAA--ACCCTTAA-ATTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGGCAAAAAAATT
* * *
21528 CATAAAAAAATTTTT-GAGTCA--G---T----TTTTAGCCGAAATCGTGTACTAACCATCACGG
761 GA-GAAAAAATTTTTCGGGTCAGTGATTTCAAATTTTAGCCGAAATCGTGTACTAACCATCAC-G
* * * * * * *
21583 TTTTTGGGCTAAAAACGCGTTTCAGGGTCCC-GGCTCTGTTTTGCATGATTTTT-CCAGAAAAAA
824 TTTTTTGGCTAAAAACGCG-TTCTGGG-CCCTGACTCAGTTTTGCATGATTTTTGGC-GTAAAGA
** * * * * ** * **
21646 TAATTGGAATATCAATATTCATCTAACAAAATCCCAGCCACGGTGGATTTAAAGATTTGTTTTTA
886 TTCTTGAAATATC-ATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGA-TT-TTTTTA
21711 CGAGCATCTGAATCTTGTTTC
948 CGAGCATCTGAATCTTGTTTC
* * * ** * *
21732 GATTTAATTAGAAATAAATTCGGGAAAAAATGGGAAAACGGTATTAGAAGCGTGGAAAACCC-TT
1 GATTTAATTAGAAATTAATTCAGAAAAAAATGAAAAAACGATATTAGAAGCGT-GAAAACCCATC
* * * * * ***
21796 AAACTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGCAAAAAAATTGAGGTAAAATT
65 AATCTTTTTTGAGATGAATTATATA-TTTTTCTGATTATTGTGGC-AAAAAATTCATAAAAAATT
* * * **
21861 TTTCGGGTCAGTGATTTCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTTTTGCT
128 TTTTGAGTCA--G---T-----TTTTAGCCGAAATCGTGTACTAACCATCACG-GTTTTTGGGCT
* * * * * ** *
21926 AAAAACGCG-TTCTGGGCCCTGACTCAGTTTTGCATGTTTTTTTTTGACGTAAAGACT-TCTTGA
182 AAAAACGCGTTTCAGGTCCC-GGCTCTGTTTTGCATG--ATTTTTCCA-G-AAAAACTAT-TTGA
* * * * * ** ** * *
21989 A-ATATCTATATTCATCAAACCAAATCTTAGCCAAATTATAAATAAAGATTT-TTTTTACGAACA
241 ATATA-CAATATTCATCTAACAAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
* * * * * * ** *
22052 TCTGAATATTGTTTCGATTTAATTTGAAATTATTTCAGAAAAAAAATGAAAAAACGATAATAGAA
305 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATATTAGAA
** * * * * * * *
22117 GCGT-GAAAGGGGCATCAATCTTTTTTGAGATGAATTATGTA-TTTTTCTGATTATTGTGGCAAA
370 GCGTGGAAA--ACCCTTAAACTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGCAAA
* *** ** **
22180 AAATTCATAAAAAAATTTTCAAGTCA-G-TTTTTAGCCGAAATCGTGTACTAACCATCACGGTTT
433 AAATTGAGGTAAACTTTTTCGGGTCAGGTTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTT
*** * * * * * * *
22243 TGGAGTTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATTATTTTTTCCATAAAAACTCAT
498 TTTTGCTAAAAACGCGTTTCTGGG-CCCGACTCAGTTTTGCATGATTTTTGCCATAAAGACTCAT
*
22308 TGGAATATCAATATTCATCTAACAAAATCTCAGCCAAGTTGGATTTAAGGATTTGTTTTTACGAG
562 TGAAATATCAATATTCATCTAACAAAATCTCAGCCAA-TTGGATTTAAGGATTTGTTTTTACGAG
* ** *
22373 CATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTTGGACAAAAAAATGGGAAAATGATATTA
626 CATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAAATGAAAAAACGATATTA
22438 GAAGCGTGGAAAACCCTTAAATTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGGCAAA
691 GAAGCGT-GAAAACCCTTAAATTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGGCAAA
** ** * *
22503 AAAATTGAGGTAACCTTTTTCGGGTTAGTGATTTCAAAATTTTAGCCGAAATCGTGTAGTAACCA
755 AAAATTGAGAAAAAATTTTTCGGGTCAGTGATTTC-AAATTTTAGCCGAAATCGTGTACTAACCA
*
22568 TCACGATTTTTTTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGGC
819 TCACG-----TTTTTTGGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGGC
22633 GTAAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATT
879 GTAAAGA-TTCTTGAAATATC-ATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATT
* *
22698 TTTTTACGAGCGTCTGAATATTGTTTC
942 TTTTTACGAGCATCTGAATCTTGTTTC
* *
22725 GATTTAATTTGAAATTGATTCAGAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAGACCCATC
1 GATTTAATTAGAAATTAATTCAGAAAAAAATGAAAAAACGATATTAGAAGCGTGAAA-ACCCATC
22790 AATCTTTTTTGAGATGAATTA-ATTATTTTTCTGATTATTGTGGCAAAAAATTCATAAAAAATTT
65 AATCTTTTTTGAGATGAATTATA-TATTTTTCTGATTATTGTGGCAAAAAATTCATAAAAAATTT
* ** * *
22854 TTTGAGTAAGTTTTTAGGTGAAATCGTGTACTAACCATCACGGTTTTTGGGTTATAAACGCGTTT
129 TTTGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTT
22919 CAGGATCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACTAATTTGAATATAC-ATATTCATC
194 CAGG-TCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACT-ATTTGAATATACAATATTCATC
* * * * *
22983 TAACAAAATCCCAGACACGTTTGATTTAAGGATTTGTTTTTACAAGCATCTGAATCTTGTTTCGA
257 TAACAAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
*
23048 TTTAATTAGAAATAAATTCGGACAAAAAATGGGAAGACGATATTAGAAGCGTGGAAAACCCTTAA
322 TTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATATTAGAAGCGTGGAAAACCCTTAA
*
23113 ACTCTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGCAAAAAAATTGAGGTAAACTTTT
387 ACTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGC-AAAAAATTGAGGTAAACTTTT
23178 TCGGGTCAGTGATTTCAAAAATTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTTGCTAAA
451 TCGGGTCAG-G-TTT------TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTTGCTAAA
* * *
23243 AACGCG-TTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGACGTAAAGACTTATTGAAATATCA
508 AACGCGTTTCTGGGCCC-GACTCAGTTTTGCATGATTTTTGCCATAAAGACTCATTGAAATATCA
* * * *
23307 TTATTCATCGAACCAAATCCCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATC
572 ATATTCATCTAACAAAATCTCAGCCA-ATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATC
*
23372 TTGTTTCGATTTAATTAGAAATAAATTCGGAGAAAAAAATGAAAAAACGATATTAGAAGCGTGAT
636 TTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAAATGAAAAAACGATATTAGAAGCGTGA-
* * * * * * ** *
23437 AAACCCTTCAATCATTTTGGGGTTGAATTAAATAATTTTTATAAGGATTGTGGC-AAACAATTGA
700 AAACCCTTAAAT--TTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGGCAAAAAAATTGA
* * * * *
23501 GAAAAAAAATATTT-GGGTCA--G---T----TTTTAGCCAAAATCGGGTACGAACCATCACGAT
763 G--AAAAAATTTTTCGGGTCAGTGATTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACGTT
* * * * * * * ** *
23556 TTTTGGCTAAAAATGCATTTCTAGGCCTCT-ACTTAGTTTTGCATGGTTATTAGCCAAAAGAGTC
826 TTTTGGCTAAAAACGC-GTTCTGGGCC-CTGACTCAGTTTTGCATGATTTTTGGCGTAAAGATTC
*
23620 ATTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATTTTTTTGCGAG
889 -TTGAAATATC-ATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATTTTTTTACGAG
*
23685 CATCTGAATATTGTTTC
952 CATCTGAATCTTGTTTC
*
23702 AATTTAATTAGAAATTAATTCAG-AAAAAATG-AAAAACGATATTAGAAGCGTGAAAAGCCCATC
1 GATTTAATTAGAAATTAATTCAGAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAA-CCCATC
* * * *
23765 AATCTTTTTTGAGATGAATTATGTATTTTTCTAATTATTGCGGCAAAAAGAATCATATAAAAA-T
65 AATCTTTTTTGAGATGAATTATATATTTTTCTGATTATTGTGGCAAAAA-ATTCATA-AAAAATT
* *
23829 TTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGGCTAAAAACGCGTT
128 TTTTGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTT
* * * *
23894 TCAGGGTCCCAGCTTTGTTTCGCATGATTTTTTTCCAGAAAAACTCATTGGAATAT-CAATATTC
193 TCA-GGTCCCGGCTCTGTTTTGCATGA--TTTTTCCAGAAAAACT-ATTTGAATATACAATATTC
*
23958 ATCTAACAAAATCTCAGCCACCTTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTT
254 ATCTAACAAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTT
* * *
24023 CGATTTACTTAAAAATAAATTCGAACAAAAAAATGGGAAAACGATATTAGAAGCGTGGAAAACCC
319 CGATTTAATTAGAAATAAATTCGGAC-AAAAAATGGGAAAACGATATTAGAAGCGTGGAAAACCC
*
24088 TTAAACTTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGGCAAAAAAATTGAGGTAAAC
383 TTAAACTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGC-AAAAAATTGAGGTAAAC
*
24153 TTTTTCGGGTCAGTGATTTCAAAATTTTACCCGAAATCGTGTACTAACCATCACGGTTTTTTTTG
447 TTTTTCGGGTCAG-G--TT-----TTTTAGCCGAAATCGTGTACTAACCATCACGG-TTTTTTTG
* ***
24218 CTAAAAACGCGTTT-TGGGCCCTGACTCAGTTTTGCATAATTTTTGGTGTAAAGACTTC-TTGAA
503 CTAAAAACGCGTTTCTGGGCCC-GACTCAGTTTTGCATGATTTTTGCCATAAAGAC-TCATTGAA
* * * * *
24281 ATATCATTATTCATCGAAGCAAATTC-CAGCCACATTTGATTTAAGGATTTGTTTTTACGAGTAT
566 ATATCAATATTCATCTAA-CAAAATCTCAGCCA-ATTGGATTTAAGGATTTGTTTTTACGAGCAT
24345 CTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGA-AAAAAAATGAAAAAACGATATTAGAA
629 CTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAAATGAAAAAACGATATTAGAA
* ** * * * * * * * *
24409 GCATGTTAACGCTTCAATCATTTTGGGGTAGAATTATATATTTTTTATAAGTATTGTGGTAAAAA
694 GCGTGAAAACCCTTAAAT--TTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGGCAAAAA
* **** * ** ** ** * * * *
24474 AATAGAGAAAAAA-CAAAC-GAT-TTTG-GGTCAGTTTTTAGCCAAAATCGGGTACAAACCATCC
757 AATTGAGAAAAAATTTTTCGGGTCAGTGATTTCAAATTTTAGCCGAAATCGTGTACTAACCATCA
* * * * * * * **
24535 CG-GTTTTGGCTAAAAATGCATTTCTAGG-CCTCGACTTAGTTTTGCATGGTTATTGGCCAAAAG
822 CGTTTTTTGGCTAAAAACGC-GTTCTGGGCCCT-GACTCAGTTTTGCATGATTTTTGGCGTAAAG
* * *
24598 ACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCGCATTAGAAATAATGATTTTTTTA
885 A-TTCTTGAAATATC-ATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATTTTTTTA
* *
24663 CAAGCATGTGAATAC-TGTTTC
948 CGAGCATCTGAAT-CTTGTTTC
* *
24684 GATTTAATTAGAAATTAATTCAGAAAAAAAAATGAAACAACGATATTAGAAGCGTGAAATGCCCA
1 GATTTAATTAGAAATTAATTCAG--AAAAAAATGAAAAAACGATATTAGAAGCGTGAAA-ACCCA
* *
24749 TCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGTGGCAAAAAATTCATAAAAAAAT
63 TCAATCTTTTTTGAGATGAATTATATATTTTTCTGATTATTGTGGCAAAAAATTCATAAAAAATT
* * * * *
24814 TTTCGAGTCAGTTTTTAGCCGAAATCATGTACTAACTAACCATCACGATTTTAGAGCTAAAAACG
128 TTTTGAGTCAGTTTTTAGCCGAAATC--GT-GT-ACTAACCATCACGGTTTTTGGGCTAAAAACG
* * *
24879 AGTTTCAGGGTCCCGGCTCTGTTTCT-CATGAGTTTTACCAGAAAAACTCATTGGAATAT-CAAT
189 CGTTTCA-GGTCCCGGCTCTGTTT-TGCATGA-TTTTTCCAGAAAAACT-ATTTGAATATACAAT
* *
24942 ATTCATCT-ACAAAATCTCAGCCACGTTGGATTTAAGGATTTGTGTTTACGAGCATCTGAATCTT
250 ATTCATCTAACAAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTT
* * * *
25006 GTTTAGATATAATTAGAAATAAATTCGGGCAAAAAATGGGAAAACGAAATTAGAAGCGTGGAAAA
315 GTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATATTAGAAGCGTGGAAAA
* *
25071 CCCTAAAACTTTTTTGTGTTGAATTATATATTTTTTTCTGTCTATTGTGGCAAAAAATTGAGGTA
380 CCCTTAAACTTTTTTGTGTTGAATTATATA-TTTTTTCTGACTATTGTGGCAAAAAATTGAGGTA
* * *
25136 AACTTTTTCGGGTCAGTGATTTCAAAATTTTAGCTGAAATCGTTTACTAACCATAACGGTTTTTT
444 AACTTTTTCGGGTCAG-G--TT-----TTTTAGCCGAAATCGTGTACTAACCATCACGG-----T
*
25201 TTTTTTGCTAAAAACGCG-TTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGGCATAAAGACTT
496 TTTTTTGCTAAAAACGCGTTTCTGGGCCC-GACTCAGTTTTGCATGATTTTTGCCATAAAGAC-T
* * * * * ** *
25265 C-TTGAAATATCTATATTCATCAAACCAAATCTCAGACACATTAGAAATAAAGATTT-TTTTTAC
559 CATTGAAATATCAATATTCATCTAACAAAATCTCAGCCA-ATTGGATTTAAGGATTTGTTTTTAC
* * * * * * *
25328 GAGCATCTGAATATTGTTTCGATTCAATTAGAATTTAATTC--AGAAAAAAATTAAAAAATGATA
623 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAAATGAAAAAACGATA
*
25391 TTAG-A---TG--AA---TT--A-----T--G-T--ATT-T-T-TTTTAT-T---T-TTGTGGCA
688 TTAGAAGCGTGAAAACCCTTAAATTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGGCA
* * *
25427 AAAAATTCTTA-AAAAAATTTTTCGAGTCA--G--TT---A--TTAGCCGAAATCGTGTACTAAC
753 AAAAAAT-TGAGAAAAAATTTTTCGGGTCAGTGATTTCAAATTTTAGCCGAAATCGTGTACTAAC
* ** * * * * **
25482 CATCATGGTTTTGGGGCTAAAAACACGTCTCCGGGTCCC-CACTCTGTTTTGCATGATTTTTTCC
817 CATCA-CGTTTTTTGGCTAAAAACGCGT-TCTGGG-CCCTGACTCAGTTTTGCATGATTTTTGGC
* * * * ** * * ** *
25546 AG-AAAAACTCATTGGAATATCAATATTCATCTAATAAAATCTCAGCCACGTTGGATTTAAGGAT
879 -GTAAAGATTC-TTGAAATATC-ATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGA-
25610 TTGTTTTTACGAGCATCTGAATCTTGTTTC
940 TT-TTTTTACGAGCATCTGAATCTTGTTTC
* * ** *
25640 GATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGACATTAGAAGCGTGGAAAACCC-T
1 GATTTAATTAGAAATTAATTCAGA-AAAAAATGAAAAAACGATATTAGAAGCGT-GAAAACCCAT
* ** * * * * * *** *
25704 TAAAATTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGTAAAAAATTGAGGTAAACTT
64 CAATCTTTTTTGAGATGAATTATATA-TTTTTCTGATTATTGTGGCAAAAAATTCATAAAAAATT
* * *
25769 TTTCGGGTCAGTGATTTCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTTGGCT
128 TTTTGAGTCA--G---T-----TTTTAGCCGAAATCGTGTACTAACCATCACGG-TTTTTGGGCT
* * * * * * * * ***
25834 AAAAACGCG-TTCTGGGCCTGACTCAGTTTTGCATGGTTATTGGCCA-AAAGACGCCTTGAA-AT
182 AAAAACGCGTTTCAGGTCCCGGCTCTGTTTTGCATGATT-TT-TCCAGAAAAACTATTTGAATAT
* * * * ** * *
25896 ATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATTT-TTTTTACGAGCATCTA
245 A-CAATATTCATCTAACAAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTG
* * * * *
25960 AATATTGTTTCGATTCAATTAGAAATTAATTCAGG--AAAAAATGGAAAAACGATATTAAAAGCG
309 AATCTTGTTTCGATTTAATTAGAAATAAATTC-GGACAAAAAATGGGAAAACGATATTAGAAGCG
* * * * * * * *
26023 TGTAAAGCCCATCAATCTTTTTAG-ATT-AATTATGA-ATTTTTT-TGATTATTGTGGTAAAAAA
373 TGGAAAACCC-TTAAACTTTTTTGTGTTGAATTAT-ATATTTTTTCTGACTATTGTGG-CAAAAA
* *** ** * ** *
26084 ATTCATAAAAAAAATTTTCGAGTCA-G-TTTTTAGTGGAAATCGTGTACTAACCATCACGATTTT
435 ATTGA-GGTAAACTTTTTCGGGTCAGGTTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT
** * * * * * *
26147 TGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTCGCATGATTTTTTCCAGAAA-ACTCATT
499 TTTGCTAAAAACGCGTTTCTGGG-CCCGACTCAGTTTTGCATGATTTTTGCCATAAAGACTCATT
* * * * **
26211 GGAATATCAATATTAATCTAACAAAATCTCAGCCACGTTGGATTTAACGATTTGTGATTACGAGC
563 GAAATATCAATATTCATCTAACAAAATCTCAGCCA-ATTGGATTTAAGGATTTGTTTTTACGAGC
* * **
26276 ATCTGAATCTTGTTTCGATTTACTTAGAAATATATTCGGAC-AAAAAATGGGAAAACGATATTAG
627 ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAAATGAAAAAACGATATTAG
*
26340 AAGCGTGGAAAACCCTAAAACTTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGGCAAA
692 AAGCGT-GAAAACCCTTAAA-TTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGGCAAA
* ** *
26405 AAATTTGAGGAAAACTTTTTTCGGGTCAGTGATTTCAAAATTTTAGCTGAAATCGTGTACTAACC
755 AAAATTGA-GAAAAAATTTTTCGGGTCAGTGATTTC-AAATTTTAGCCGAAATCGTGTACTAACC
*
26470 ATCACGGTTTTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTT-GC--
818 ATCAC-G-TTTTTTGGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGGCGT
* * * * * ** *
26532 -ATGATTCTTGAAATATCATTATTGATCGAACCAAATCCCAGCCACATTGGATTTAAGGATTTGT
881 AAAGATTCTTGAAATATCA-TATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATTT-T
*
26596 ATTTACGAGTATCTGAATCTTGTTTC
944 -TTTACGAGCATCTGAATCTTGTTTC
* * ** *
26622 GATTTAATTAGAAATAAATTCGGAAAAAAATGAAAAAAAACGATATTAGAAGCGTGTTAACCCTT
1 GATTTAATTAGAAATTAATTCAGAAAAAAATG--AAAAAACGATATTAGAAGCGTGAAAACCCAT
* * * * * * * * *
26687 CAATC-ATTTTGGGGTAGAATTATATACTTTTTATAAGTATTGTGGTAAAAAATTAGAGGAAAAA
64 CAATCTTTTTTGAGAT-GAATTATATA-TTTTTCTGATTATTGTGGCAAAAAATT----CATAAA
** * * * *
26751 AAACGATTTTGGGTCATTTTTTAGCCAAAATCGGGTACTAACCATCACGGTTTTT-GGCTAAAAA
123 AAA-TTTTTTGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAA
* * * * * * **
26815 TGCATTTCTAGG-CCTCGACT-TAGTTTTGCATGGTTATTGGCCA-AAAGACTCCTTGAA-ATAT
187 CGCGTTTC-AGGTCC-CGGCTCT-GTTTTGCATGATT-TT-TCCAGAAAAACTATTTGAATATA-
* * * * ** *
26876 CTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGA-TT-TTTTTACGAGCATCTGAA
246 CAATATTCATCTAACAAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAA
* * * **
26939 TATTGTTTCGATTTAATTAGAAATTAATTCAGA-AAAAAATGAAAAAACGATATTAGAAGCGT-G
311 TCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATATTAGAAGCGTGG
* * * * * * *
27002 AAAAGCCCATCAATCTCTTTTGAGATTGAATTATGTA-TTTTTCTGATTATTATGG-AAAAAATT
376 AAAA-CCC-TTAAACTTTTTTGTG-TTGAATTATATATTTTTTCTGACTATTGTGGCAAAAAATT
* *** ** * **
27065 CATAAAAAAAATTTTCGAGTCA-G-TTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
438 GA-GGTAAACTTTTTCGGGTCAGGTTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTT
* * * * * * *
27128 GCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTCGCATGACTTTTT-CCAGAAAAACTCATTGG
502 GCTAAAAACGCGTTTCTGGG-CCCGACTCAGTTTTGCATGA-TTTTTGCCATAAAGACTCATTGA
* *
27192 AATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAACGATTTGTTTTTACGAGCAT
565 AATATCAATATTCATCTAACAAAATCTCAGCCA-ATTGGATTTAAGGATTTGTTTTTACGAGCAT
**
27257 CTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAC-AAAAAATGGGAAAACGATATTAGAA
629 CTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAAATGAAAAAACGATATTAGAA
27321 GCGTGGAAAACCCTTAAACTTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTTGG-AAAA
694 GCGT-GAAAACCCTTAAA-TTTTTTGGGTTGAATTATATATTTTTTCTGACTATTG-TGGCAAAA
** * *
27385 AAATTGAGGTAAACTTTTTCGAGGTCAGTGATTTCAAAATTTTAGCCGAAATCGTTTACTAACCA
756 AAATTGAGAAAAAATTTTTCG-GGTCAGTGATTTC-AAATTTTAGCCGAAATCGTGTACTAACCA
* * *
27450 TCACGGTTTTTTTTGCTAAAAACGCGTTCTGGGCCTTGACTCAATTTTGCATGATTTTTGGCGTA
819 TCAC-G-TTTTTTGGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGGCGTA
* * * * * * ** *
27515 AAGAATTATTGAAATATCATTATTCATCGAACCAAATCCCAACCATATTGGATTTAAGGATTTGT
882 AAG-ATTCTTGAAATATCA-TATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGA-TT-T
27580 TTTTACGAGCATCTGAATCTTGTTTC
943 TTTTACGAGCATCTGAATCTTGTTTC
27606 GATTTAATTAGAAAT
1 GATTTAATTAGAAAT
27621 AAATGCATTT
Statistics
Matches: 4965, Mismatches: 660, Indels: 518
0.81 0.11 0.08
Matches are distributed among these distances:
942 2 0.00
943 63 0.01
944 70 0.01
945 22 0.00
946 2 0.00
948 27 0.01
949 1 0.00
950 1 0.00
952 25 0.01
953 4 0.00
954 101 0.02
955 71 0.01
956 61 0.01
957 37 0.01
958 26 0.01
959 44 0.01
960 85 0.02
961 49 0.01
962 21 0.00
963 4 0.00
964 1 0.00
965 18 0.00
966 1 0.00
968 4 0.00
969 1 0.00
970 1 0.00
971 5 0.00
972 1 0.00
973 25 0.01
974 63 0.01
975 104 0.02
976 163 0.03
977 366 0.07
978 514 0.10
979 608 0.12
980 248 0.05
981 104 0.02
982 311 0.06
983 96 0.02
984 105 0.02
985 93 0.02
986 231 0.05
987 193 0.04
988 184 0.04
989 340 0.07
990 159 0.03
991 67 0.01
992 32 0.01
993 96 0.02
994 54 0.01
995 61 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (968 bp):
GATTTAATTAGAAATTAATTCAGAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAACCCATCA
ATCTTTTTTGAGATGAATTATATATTTTTCTGATTATTGTGGCAAAAAATTCATAAAAAATTTTT
TGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTTCA
GGTCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACTATTTGAATATACAATATTCATCTAAC
AAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTA
ATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATATTAGAAGCGTGGAAAACCCTTAAACTT
TTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGCAAAAAATTGAGGTAAACTTTTTCGGG
TCAGGTTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTTGCTAAAAACGCGTTTCTGG
GCCCGACTCAGTTTTGCATGATTTTTGCCATAAAGACTCATTGAAATATCAATATTCATCTAACA
AAATCTCAGCCAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
TAGAAATAAATTCGGACAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAACCCTTAAATTTTT
TGGGTTGAATTATATATTTTTTCTGACTATTGTGGCAAAAAAATTGAGAAAAAATTTTTCGGGTC
AGTGATTTCAAATTTTAGCCGAAATCGTGTACTAACCATCACGTTTTTTGGCTAAAAACGCGTTC
TGGGCCCTGACTCAGTTTTGCATGATTTTTGGCGTAAAGATTCTTGAAATATCATATTCATCAAA
CCAAATCTCAGCCACATTAGAAATAAAGATTTTTTTACGAGCATCTGAATCTTGTTTC
Found at i:25052 original size:652 final size:643
Alignment explanation
Indices: 20736--27624 Score: 7218
Period size: 652 Copynumber: 10.6 Consensus size: 643
20726 TAGAGAAAGA
* * * * **
20736 ACGAGCATATGAAAATT-ATTCTGATTTAATTTA-AAATTAATTCAGTAAAAAATGAAAAAATAA
1 ACGAGCATCTGAATATTGTTTC-GATTTAA-TTAGAAATTAATTCAGAAAAAAATGAAAAAACGA
*
20799 TATTAGAATCGTGAAAGACCCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGT
64 TATTAGAAGCGTGAAAG-CCCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGT
* * *
20864 GGCAAAAAAATCATAAAAAAATTTTCGAGTCAGTTTTTAGCCGAAACCGTGTACTAATCATCACG
128 GGCAAAAAATTCATAAAAAAATTTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACG
20929 GTTTTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACT
193 GTTTTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACT
* * *
20994 AATTGGAATATCAATATTCATCTAACAAAATCCCAGCCACGTTGGATTTAAGGATTTGCTTTTAC
258 CATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTAC
*
21059 GAGCATCTGAATCTTGTTTCGATTTAATTCGAAATAAATTCGGACAAAAAATGGGAAAACGATAT
323 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATAT
*
21124 TAGAAGCGTGGAAAACCCTTAAACTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGC
388 TAGAAGCGTGGAAAACCCTTAATCTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGC
21189 AAAAAAATTGAGGTAAACTTTTTCGGGTCAGTGATTTCAAAATTTTAGCCGAAATCGTGTACTAA
453 AAAAAAATTGAGGTAAACTTTTTCGGGTCAG-G--TT-----TTTTAGCCGAAATCGTGTACTAA
* *
21254 CCATCACAGTTTTTTTTGCTAAAAACGCGTTCTGGGCCTTGACTCAGTTTTGCATGATTTTTGGC
510 CCATCAC-G-TGTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGGC
** * *
21319 GTAAAGACTTCTTAAAATATCTATATTCATCAAACCAAATCTCAGCCAAATTAGAAATAAAGATT
573 CAAAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATT
*
21384 CTTTTT
638 TTTTTT
*
21390 ACGAGCATCTGAATATTGTTTCGATTTAATTTGAAATTAATTCAG-AAAAAATGAAAAAACGATA
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATGAAAAAACGATA
* *
21454 TTAGAAGCGTGAAAGGGCCATCAATCTTTTTTGAGATGAATTATGTATCTTTCTGATTATTGTGG
66 TTAGAAGCGTGAAA-GCCCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGTGG
*
21519 CAAAAAATTCATAAAAAAATTTTTGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGT
130 CAAAAAATTCATAAAAAAATTTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGT
* *
21584 TTTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAAATAA
195 TTTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACTCA
* * *
21649 TTGGAATATCAATATTCATCTAACAAAATCCCAGCCACGGTGGATTTAAAGATTTGTTTTTACGA
260 TTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGA
* *
21714 GCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGG-GAAAAAATGGGAAAACGGTATTA
325 GCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATATTA
*
21778 GAAGCGTGGAAAACCCTTAAACTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGCAA
390 GAAGCGTGGAAAACCCTTAATCTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGCAA
*
21843 AAAAATTGAGGTAAAATTTTTCGGGTCAGTGATTTCAAAATTTTAGCCGAAATCGTGTACTAACC
455 AAAAATTGAGGTAAACTTTTTCGGGTCAG-G--TT-----TTTTAGCCGAAATCGTGTACTAACC
* * *
21908 ATCACGATTTTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGTTTTTTTTTGA
512 ATCACG--TGTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATG---ATTTTTGG
** * * *
21973 CGTAAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTTAGCCAAATTATAAATAAAGAT
572 CCAAAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGAT
22038 TTTTTTT
637 TTTTTTT
* * *
22045 ACGAACATCTGAATATTGTTTCGATTTAATTTGAAATTATTTCAGAAAAAAAATGAAAAAACGAT
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAG-AAAAAAATGAAAAAACGAT
* **
22110 AATAGAAGCGTGAAAGGGGCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGTG
65 ATTAGAAGCGTGAAA-GCCCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGTG
*
22175 GCAAAAAATTCATAAAAAAATTTTCAAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGG
129 GCAAAAAATTCATAAAAAAATTTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGG
* * *
22240 -TTTTGGAGTTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATTATTTTTTCCATAAAAAC
194 TTTTTGG-GCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATGA-TTTTTCCAGAAAAAC
*
22304 TCATTGGAATATCAATATTCATCTAACAAAATCTCAGCCAAGTTGGATTTAAGGATTTGTTTTTA
257 TCATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTA
* *
22369 CGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTTGGACAAAAAAATGGGAAAATGAT
322 CGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAC-AAAAAATGGGAAAACGAT
* *
22434 ATTAGAAGCGTGGAAAACCCTTAA-ATTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTG
386 ATTAGAAGCGTGGAAAACCCTTAATCTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTG
* * *
22498 GCAAAAAAATTGAGGTAACCTTTTTCGGGTTAGTGATTTCAAAATTTTAGCCGAAATCGTGTAGT
451 GCAAAAAAATTGAGGTAAACTTTTTCGGGTCAG-G--TT-----TTTTAGCCGAAATCGTGTACT
*
22563 AACCATCACGATTTTTTTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTT
508 AACCATCACG-----TGTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTT
**
22628 TTGGCGTAAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAA
568 TTGGCCAAAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAA
22693 AGA-TTTTTTT
633 AGATTTTTTTT
* * *
22703 ACGAGCGTCTGAATATTGTTTCGATTTAATTTGAAATTGATTCAGAAAAAAATGAAAAAACGATA
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATGAAAAAACGATA
22768 TTAGAAGCGTGAAAGACCCATCAATCTTTTTTGAGATGAATTAAT-TATTTTTCTGATTATTGTG
66 TTAGAAGCGTGAAAG-CCCATCAATCTTTTTTGAGATGAATT-ATGTATTTTTCTGATTATTGTG
* * * **
22832 GCAAAAAATTCATAAAAAATTTTTTGAGTAAGTTTTTAGGTGAAATCGTGTACTAACCATCACGG
129 GCAAAAAATTCATAAAAAAATTTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGG
* * * *
22897 TTTTTGGGTTATAAACGCGTTTCAGGATCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACTA
194 TTTTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACTC
* * * *
22962 ATTTGAATAT-ACATATTCATCTAACAAAATCCCAGACACGTTTGATTTAAGGATTTGTTTTTAC
259 ATTGGAATATCA-ATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTAC
* *
23026 AAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAGACGATAT
323 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATAT
* *
23091 TAGAAGCGTGGAAAACCCTTAAACTCTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGC
388 TAGAAGCGTGGAAAACCCTTAATCTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGC
23156 AAAAAAATTGAGGTAAACTTTTTCGGGTCAGTGATTTCAAAAATTTAGCCGAAATCGTGTACTAA
453 AAAAAAATTGAGGTAAACTTTTTCGGGTCAG-G-TTT------TTTAGCCGAAATCGTGTACTAA
* * *
23221 CCATCACGGTTTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGACG
510 CCATCAC-GTGTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGGCC
* * * * * ** *
23286 TAAAGACTTATTGAAATATC-ATTATTCATCGAACCAAATCCCAGCCACATTGGATTTAAGGATT
574 AAAAGACTTCTTGAAATATCTA-TATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATT
23350 TGTTTTT
638 T-TTTTT
* *
23357 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAGAAAAAAATGAAAAAACGA
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTC--AGAAAAAAATGAAAAAACGA
* * * * * * ** * * **
23422 TATTAGAAGCGTGATAAACCCTTCAATCATTTTGGGGTTGAATTAAATAATTTTTATAAGGATTG
64 TATTAGAAGCGTGA-AAGCCCATCAATCTTTTTTGAGATGAATTATGT-ATTTTTCTGATTATTG
* * * * * * *
23487 TGGCAAACAATTGAGAAAAAAAATATTT-GGGTCAGTTTTTAGCCAAAATCGGGTACGAACCATC
127 TGGCAAAAAATTCA-TAAAAAAAT-TTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATC
* * * ** * *
23551 ACGATTTTT-GGCTAAAAATGCATTTCTA-GG-CCTCTACT-TAGTTTTGCATGGTTATTAGCCA
190 ACGGTTTTTGGGCTAAAAACGCGTTTC-AGGGTCC-CGGCTCT-GTTTTGCATGATT-TT-TCCA
* * * * * * * * ** *
23612 -AAAGAGTCATTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGA-TT
250 GAAAAACTCATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAGGATTT
* * * * * *
23675 -TTTTTGCGAGCATCTGAATATTGTTTCAATTTAATTAGAAATTAATTC--AGAAAAAAT-GAAA
315 GTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAA
* * * * *
23736 AACGATATTAGAAGCGT-GAAAAGCCCATCAATCTTTTTTGAGATGAATTATGTA-TTTTTCTAA
380 AACGATATTAGAAGCGTGGAAAA-CCC-TTAATCTTTTTTGTGTTGAATTATATATTTTTTCTGA
* * * ** ** *
23799 TTATTGCGGCAAAAAGAA-TCATATAAAAATTTTCGAGTCA-G-TTTTTAGCCGAAATCGTGTAC
443 CTATTGTGGCAAAAA-AATTGAGGTAAACTTTTTCGGGTCAGGTTTTTTAGCCGAAATCGTGTAC
* * * ** *
23861 TAACCATCACGAT-TTTTGGGCTAAAAACGCGTTTCAGGGTCCCAG-CTTTGTTTCGCATGATTT
507 TAACCATCACG-TGTTTT-TGCTAAAAACGCG-TTCTGGG-CCCTGACTCAGTTTTGCATGATTT
** * * * * * * * **
23924 TTTTCCAGAAAAAC-TCATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACCTTGGATTT
568 TTGGCCA-AAAGACTTC-TTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAAT
*
23988 AAGGATTTGTTTTT
631 AAAGATTT-TTTTT
* * * * * **
24002 ACGAGCATCTGAATCTTGTTTCGATTTACTTAAAAATAAATTCGAACAAAAAAATGGGAAAACGA
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTC--AGAAAAAAATGAAAAAACGA
* * * * * * *
24067 TATTAGAAGCGTGGAAAACCC-TTAAACTTTTTTGGGTTGAATTATATATTTTTTCTGACTATTG
64 TATTAGAAGCGT-GAAAGCCCATCAATCTTTTTTGAGATGAATTATGTA-TTTTTCTGATTATTG
* *** ** * *
24131 TGGCAAAAAAATTGAGGTAAACTTTTTCGGGTCAGTGATTTCAAAATTTTACCCGAAATCGTGTA
127 TGGC-AAAAAATTCATAAAAAAATTTTCGAGTCA--G---T-----TTTTAGCCGAAATCGTGTA
** * * * *
24196 CTAACCATCACGGTTTTTTTTGCTAAAAACGCGTTT-TGGG-CCCTGACTCAGTTTTGCATAATT
181 CTAACCATCACGG-TTTTTGGGCTAAAAACGCGTTTCAGGGTCCC-GGCTCTGTTTTGCATGATT
*** * * * * * * *
24259 TTTGGTGTAAAGACTTC-TTGAAATATCATTATTCATCGAAGCAAATTC-CAGCCACATTTGATT
244 TTTCCAG-AAAAAC-TCATTGGAATATCAATATTCATCTAA-CAAAATCTCAGCCACGTTGGATT
* *
24322 TAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAA
306 TAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAA
** * ** * * * * *
24387 AAATGAAAAAACGATATTAGAAGCAT-GTTAACGCTTCAATCATTTTGGGGTAGAATTATATATT
371 AAATGGGAAAACGATATTAGAAGCGTGGAAAACCCTT-AATCTTTTTTGTGTTGAATTATATATT
* * * * * ** *
24451 TTTTATAAGTATTGTGGTAAAAAAATAGAGAAAAAACAAACGATTTT-GGGTCA-G-TTTTTAGC
435 TTTTCTGACTATTGTGGCAAAAAAATTGAG-----GTAAAC-TTTTTCGGGTCAGGTTTTTTAGC
* * * * * * * * *
24513 CAAAATCGGGTACAAACCATCCCG-GTTTTGGCTAAAAATGCATTTCTAGG-CCTCGACTTAGTT
494 CGAAATCGTGTACTAACCATCACGTGTTTTTGCTAAAAACGC-GTTCTGGGCCCT-GACTCAGTT
* * * *
24576 TTGCATGGTTATTGGCCAAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCGC
557 TTGCATGATTTTTGGCCAAAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCAC
*
24641 ATTAGAAATAATGA-TTTTTTT
622 ATTAGAAATAAAGATTTTTTTT
* * * *
24662 ACAAGCATGTGAATACTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAAAATGAAACAACGA
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAG--AAAAAAATGAAAAAACGA
24727 TATTAGAAGCGTGAAATGCCCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGT
64 TATTAGAAGCGTGAAA-GCCCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGT
*
24792 GGCAAAAAATTCATAAAAAAATTTTCGAGTCAGTTTTTAGCCGAAATCATGTACTAACTAACCAT
128 GGCAAAAAATTCATAAAAAAATTTTCGAGTCAGTTTTTAGCCGAAATC--GT-GT-ACTAACCAT
* * * * *
24857 CACGATTTTAGAGCTAAAAACGAGTTTCAGGGTCCCGGCTCTGTTTCT-CATGAGTTTTACCAGA
189 CACGGTTTTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTT-TGCATGA-TTTTTCCAGA
24921 AAAACTCATTGGAATATCAATATTCATCT-ACAAAATCTCAGCCACGTTGGATTTAAGGATTTGT
252 AAAACTCATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAGGATTTGT
* * * *
24985 GTTTACGAGCATCTGAATCTTGTTTAGATATAATTAGAAATAAATTCGGGCAAAAAATGGGAAAA
317 TTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAA
* * * *
25050 CGAAATTAGAAGCGTGGAAAACCCTAAAACTTTTTTGTGTTGAATTATATATTTTTTTCTGTCTA
382 CGATATTAGAAGCGTGGAAAACCCTTAATCTTTTTTGTGTTGAATTATATA-TTTTTTCTGACTA
*
25115 TTGTGGC-AAAAAATTGAGGTAAACTTTTTCGGGTCAGTGATTTCAAAATTTTAGCTGAAATCGT
446 TTGTGGCAAAAAAATTGAGGTAAACTTTTTCGGGTCAG-G--TT-----TTTTAGCCGAAATCGT
* * *
25179 TTACTAACCATAACGGTTTTTTTTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCA
503 GTACTAACCATCAC-G-----TGTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCA
*
25244 TGATTTTTGG-CATAAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTCAGACACATTA
562 TGATTTTTGGCCA-AAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTA
25308 GAAATAAAGATTTTTTTT
626 GAAATAAAGATTTTTTTT
* * * *
25326 ACGAGCATCTGAATATTGTTTCGATTCAATTAGAATTTAATTCAGAAAAAAATTAAAAAATGATA
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATGAAAAAACGATA
*
25391 TTAG-A---T----G------AA------TT---ATG---TAT-T-TTTTT-T-ATTTTTGTGGC
66 TTAGAAGCGTGAAAGCCCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGTGGC
* * *
25426 AAAAAATTCTTAAAAAAATTTTTCGAGTCAGTTATTAGCCGAAATCGTGTACTAACCATCATGGT
131 AAAAAATTCATAAAAAAA-TTTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGT
* * * * **
25491 TTTGGGGCTAAAAACACGTCTCCGGGTCCCCACTCTGTTTTGCATGATTTTTTCCAGAAAAACTC
195 TTTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATGA-TTTTTCCAGAAAAACTC
*
25556 ATTGGAATATCAATATTCATCTAATAAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACG
259 ATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACG
*
25621 AGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGACATT
324 AGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATATT
** *
25686 AGAAGCGTGGAAAACCCTTAAAATTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGG-T
389 AGAAGCGTGGAAAACCCTTAATCTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGCA
25750 AAAAAATTGAGGTAAACTTTTTCGGGTCAGTGATTTCAAAATTTTAGCCGAAATCGTGTACTAAC
454 AAAAAATTGAGGTAAACTTTTTCGGGTCAG-G--TT-----TTTTAGCCGAAATCGTGTACTAAC
* * *
25815 CATCACGGTTTTTTTGGCTAAAAACGCGTTCTGGG-CCTGACTCAGTTTTGCATGGTTATTGGCC
511 CATCAC-GTGTTTTT-GCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGGCC
**
25879 AAAAGACGCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATTT
574 AAAAGACTTCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATTT
25944 TTTTT
639 TTTTT
* * * *
25949 ACGAGCATCTAAATATTGTTTCGATTCAATTAGAAATTAATTCAGGAAAAAATGGAAAAACGATA
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATGAAAAAACGATA
* * * *
26014 TTAAAAGCGTGTAAAGCCCATCAATC-TTTTT-AGATTAATTATGAATTTTTTTGATTATTGTGG
66 TTAGAAGCGTG-AAAGCCCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGTGG
* **
26077 TAAAAAAATTCATAAAAAAAATTTTCGAGTCAGTTTTTAGTGGAAATCGTGTACTAACCATCACG
130 -CAAAAAATTCAT-AAAAAAATTTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACG
* *
26142 ATTTTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTCGCATGATTTTTTCCAG-AAAAC
193 GTTTTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATGA-TTTTTCCAGAAAAAC
* * **
26206 TCATTGGAATATCAATATTAATCTAACAAAATCTCAGCCACGTTGGATTTAACGATTTGTGATTA
257 TCATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTA
* *
26271 CGAGCATCTGAATCTTGTTTCGATTTACTTAGAAATATATTCGGACAAAAAATGGGAAAACGATA
322 CGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATA
* * *
26336 TTAGAAGCGTGGAAAACCCTAAAACTTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGTGG
387 TTAGAAGCGTGGAAAACCCTTAATCTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGG
* * *
26401 CAAAAAATTTGAGGAAAACTTTTTTCGGGTCAGTGATTTCAAAATTTTAGCTGAAATCGTGTACT
452 CAAAAAAATTGAGGTAAAC-TTTTTCGGGTCAG-G--TT-----TTTTAGCCGAAATCGTGTACT
*
26466 AACCATCACGGTTTTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTT-
508 AACCATCAC-G-TGTTTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTG
* * * * * ** *
26530 G-C--ATGA-TTCTTGAAATATC-ATTATTGATCGAACCAAATCCCAGCCACATTGGATTTAAGG
571 GCCAAAAGACTTCTTGAAATATCTA-TATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAG
*
26590 ATTTGTATTT
635 ATTT-TTTTT
* * * *
26600 ACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGAAAAAAAACGA
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATG--AAAAAACGA
* * * * * * * * *
26665 TATTAGAAGCGTGTTAA-CCCTTCAATC-ATTTTGGGGTAGAATTATATACTTTTTATAAGTATT
64 TATTAGAAGCGTG-AAAGCCCATCAATCTTTTTTGAGAT-GAATTATGTA-TTTTTCTGATTATT
* * * * * * *
26728 GTGGTAAAAAATTAGAGGAAAAAAAACGATTTT-GGGTCATTTTTTAGCCAAAATCGGGTACTAA
126 GTGGCAAAAAATT----CATAAAAAA--ATTTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAA
* * * *
26792 CCATCACGGTTTTT-GGCTAAAAATGCATTTCTA-GG-CCTCGACT-TAGTTTTGCATGGTTATT
185 CCATCACGGTTTTTGGGCTAAAAACGCGTTTC-AGGGTCC-CGGCTCT-GTTTTGCATGATT-TT
* * * * * * * * * ** *
26853 GGCCA-AAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAA
246 -TCCAGAAAAACTCATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAG
* * *
26917 GA-TT-TTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAGA-AAAAAAT
310 GATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAAT
** * * * *
26979 GAAAAAACGATATTAGAAGCGT-GAAAAGCCCATCAATCTCTTTTGAGATTGAATTATGTA-TTT
375 GGGAAAACGATATTAGAAGCGTGGAAAA-CCC-TTAATCTTTTTTGTG-TTGAATTATATATTTT
* * * *** ** *
27042 TTCTGATTATTATGG--AAAAAATTCATAAAAAAAATTTTCGAGTCA-G-TTTTTAGCCGAAATC
437 TTCTGACTATTGTGGCAAAAAAATTGA-GGTAAACTTTTTCGGGTCAGGTTTTTTAGCCGAAATC
* * * *
27103 GTGTACTAACCATCACG-GTTTTTGGGCTAAAAACGCGTTTCAGGGTCCC-GGCTCTGTTTCGCA
501 GTGTACTAACCATCACGTGTTTTT--GCTAAAAACGCG-TTCTGGG-CCCTGACTCAGTTTTGCA
* * * * * *
27166 TGACTTTTT--CCAGAAAAAC-TCATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGT
562 TGA-TTTTTGGCCA-AAAGACTTC-TTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAT
* ** *
27228 TGGATTTAACGATTTGTTTTT
624 TAGAAATAAAGATTT-TTTTT
* * * **
27249 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGAT
1 ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAGA-AAAAAATGAAAAAACGAT
* * * * * * *
27314 ATTAGAAGCGTGGAAAACCC-TTAAACTTTTTTGGGTTGAATTATATATTTTTTCTGACTATTGT
65 ATTAGAAGCGT-GAAAGCCCATCAATCTTTTTTGAGATGAATTATGTA-TTTTTCTGATTATTG-
* * *** ** *
27378 TGGAAAAAAATTGAGGTAAACTTTTTCGAGGTCAGTGATTTCAAAATTTTAGCCGAAATCGTTTA
127 TGGCAAAAAATTCATAAAAAAATTTTCGA-GTCA--G---T-----TTTTAGCCGAAATCGTGTA
** * * * **
27443 CTAACCATCACGGTTTTTTTTGCTAAAAACGCG-TTCTGGG-CCTTGACTCAATTTTGCATGATT
181 CTAACCATCACGG-TTTTTGGGCTAAAAACGCGTTTCAGGGTCC-CGGCTCTGTTTTGCATGATT
* * * * * * * * **
27506 TTTGGC-GTAAAGAA-TTATTGAAATATCATTATTCATCGAACCAAATCCCAACCATATTGGATT
244 TTT-CCAG-AAA-AACTCATTGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATT
27569 TAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAAT
306 TAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAAT
27625 GCATTTCTAG
Statistics
Matches: 5380, Mismatches: 619, Indels: 468
0.83 0.10 0.07
Matches are distributed among these distances:
623 160 0.03
624 22 0.00
627 2 0.00
628 176 0.03
629 144 0.03
630 2 0.00
631 27 0.01
632 28 0.01
633 5 0.00
634 1 0.00
635 3 0.00
638 5 0.00
641 7 0.00
642 5 0.00
643 65 0.01
644 121 0.02
645 169 0.03
646 8 0.00
647 12 0.00
648 54 0.01
649 138 0.03
650 63 0.01
651 66 0.01
652 673 0.13
653 582 0.11
654 269 0.05
655 340 0.06
656 494 0.09
657 544 0.10
658 403 0.07
659 244 0.05
660 172 0.03
661 27 0.01
662 118 0.02
663 120 0.02
664 68 0.01
665 38 0.01
666 5 0.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (643 bp):
ACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAAATGAAAAAACGATA
TTAGAAGCGTGAAAGCCCATCAATCTTTTTTGAGATGAATTATGTATTTTTCTGATTATTGTGGC
AAAAAATTCATAAAAAAATTTTCGAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTT
TTTGGGCTAAAAACGCGTTTCAGGGTCCCGGCTCTGTTTTGCATGATTTTTCCAGAAAAACTCAT
TGGAATATCAATATTCATCTAACAAAATCTCAGCCACGTTGGATTTAAGGATTTGTTTTTACGAG
CATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGACAAAAAATGGGAAAACGATATTAG
AAGCGTGGAAAACCCTTAATCTTTTTTGTGTTGAATTATATATTTTTTCTGACTATTGTGGCAAA
AAAATTGAGGTAAACTTTTTCGGGTCAGGTTTTTTAGCCGAAATCGTGTACTAACCATCACGTGT
TTTTGCTAAAAACGCGTTCTGGGCCCTGACTCAGTTTTGCATGATTTTTGGCCAAAAGACTTCTT
GAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGAAATAAAGATTTTTTTT
Done.