Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006296.1 Corchorus capsularis cultivar CVL-1 contig06316, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4195
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29


Found at i:4123 original size:18 final size:18

Alignment explanation


    Indices: 4080--4139  Score: 75
    Period size: 18  Copynumber: 3.3  Consensus size: 18

       4070 CGATCGATAT

                             *
       4080 CGTCACTATCATCAATAG
          1 CGTCACTATCATCAATAA

                               
       4098 CGGTCACTATCATCAATAA
          1 C-GTCACTATCATCAATAA

                    *    *   *
       4117 CGTCACTAGCATCCATAT
          1 CGTCACTATCATCAATAA

                 
       4135 CGTCA
          1 CGTCA

       4140 TAAAATTCTA


Statistics
Matches: 37,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
  18   20  0.54
  19   17  0.46

ACGTcount: A:0.32, C:0.30, G:0.12, T:0.27


Consensus pattern (18 bp):   
CGTCACTATCATCAATAA
Done.