Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006297.1 Corchorus capsularis cultivar CVL-1 contig06317, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2343
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31


Found at i:2232 original size:24 final size:21

Alignment explanation


    Indices: 2129--2219  Score: 119
    Period size: 21  Copynumber: 4.3  Consensus size: 21

       2119 ACTCACAAAG

                        * *  *    
       2129 AAAAGAGGAAGTGATTTAGACA
          1 AAAAGA-GAAGTAACTTGGACA

                      *          
       2151 AAAAGAGAAGCAACTTGGACA
          1 AAAAGAGAAGTAACTTGGACA

                      *         *
       2172 AAAAGAGAAGCAACTTGGACG
          1 AAAAGAGAAGTAACTTGGACA

                                 
       2193 AAAAGAGAAGTAACTTGGACA
          1 AAAAGAGAAGTAACTTGGACA

                  
       2214 AAAAGA
          1 AAAAGA

       2220 AACGAAGTGA


Statistics
Matches: 62,  Mismatches: 7, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
  21   56  0.90
  22    6  0.10

ACGTcount: A:0.53, C:0.10, G:0.25, T:0.12


Consensus pattern (21 bp):   
AAAAGAGAAGTAACTTGGACA
Done.