Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006310.1 Corchorus capsularis cultivar CVL-1 contig06331, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11191
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27


Found at i:435 original size:13 final size:13

Alignment explanation


    Indices: 417--442  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        407 AGTTGTATCT

                         
        417 CTCAATCGAGTTA
          1 CTCAATCGAGTTA

                         
        430 CTCAATCGAGTTA
          1 CTCAATCGAGTTA

        443 AGGGGATCTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31


Consensus pattern (13 bp):   
CTCAATCGAGTTA
Done.