Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006318.1 Corchorus capsularis cultivar CVL-1 contig06339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67070

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108--140
15
2.1
16
88
5
50
63
15
0
21
1.30
7049--7079
11
2.8
11
95
0
53
0
0
9
90
0.46
7049--7080
16
2.1
15
94
5
55
0
0
9
90
0.45
7049--7082
12
2.9
12
91
4
52
0
0
11
88
0.52
7591--7729
16
8.4
16
68
15
61
14
7
37
41
1.73
7584--7737
32
5.2
31
75
19
150
12
7
37
41
1.73
7631--7679
21
2.3
21
85
0
62
10
8
38
42
1.68
7642--7687
21
2.1
22
92
4
76
15
6
32
45
1.71
7610--7717
53
2.0
53
100
0
216
14
7
35
42
1.74
7882--7920
20
2.0
20
85
10
53
35
5
5
53
1.45
7940--8029
16
5.7
16
75
12
69
6
12
31
50
1.66
7969--8027
16
3.7
16
84
8
75
5
11
28
54
1.58
7940--8026
32
2.8
32
87
1
113
6
11
29
51
1.64
8242--8281
17
2.3
18
95
4
73
57
2
5
35
1.34
8688--8716
15
1.9
15
100
0
58
55
13
10
20
1.68
11206--11804
162
3.7
163
87
3
819
25
15
14
44
1.84
11735--11878
74
1.9
74
94
0
252
26
22
13
37
1.91
30042--30096
28
2.0
28
88
0
83
18
27
21
32
1.96
37229--37271
19
2.4
19
92
7
72
53
20
9
16
1.70
37576--37615
14
2.8
14
88
11
55
0
12
0
87
0.54
43922--43953
17
1.9
17
93
6
57
3
6
3
87
0.73
52902--52934
15
2.2
15
94
0
57
9
6
24
60
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55460--55549
45
2.0
45
91
4
146
25
23
17
33
1.96
56372--56441
33
2.3
31
85
9
90
58
5
8
27
1.50
66014--66155
75
1.9
72
84
9
189
22
27
4
45
1.71

Tables:   1

The End!