Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006319.1 Corchorus capsularis cultivar CVL-1 contig06340, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51049

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1652--1682
15
2.1
15
93
0
53
29
0
25
45
1.54
1954--2255
109
2.7
109
90
5
435
36
10
2
50
1.50
3568--3607
14
2.7
14
88
7
53
12
2
35
50
1.54
3769--3805
16
2.2
17
86
13
51
27
10
10
51
1.70
8146--8175
15
2.0
15
93
0
51
13
50
26
10
1.73
8217--8312
13
7.3
13
65
30
53
26
42
14
16
1.87
8219--8337
26
4.5
26
75
8
116
27
41
15
15
1.88
8216--8337
53
2.3
52
85
4
156
27
40
14
16
1.88
9141--9175
2
17.5
2
100
0
70
51
0
0
48
1.00
11708--11792
41
2.1
41
85
12
113
56
20
9
14
1.65
16108--16166
31
1.9
30
86
3
82
38
16
15
28
1.89
23601--23625
2
12.5
2
100
0
50
52
0
0
48
1.00
26914--27052
33
4.3
33
89
2
203
43
20
11
25
1.85
26941--27085
66
2.2
66
83
2
175
42
20
11
25
1.85
27078--27182
33
3.2
33
82
8
133
45
20
9
24
1.80
42193--42237
15
3.0
15
81
12
56
37
13
11
37
1.80
47969--48013
20
2.3
19
81
7
54
44
8
6
40
1.62
47977--48014
20
1.9
20
88
0
58
42
7
7
42
1.63
48256--48289
16
2.1
16
88
0
50
23
2
2
70
1.15

Tables:   1

The End!