Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006321.1 Corchorus capsularis cultivar CVL-1 contig06342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4563
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:2530 original size:14 final size:14

Alignment explanation


    Indices: 2511--2540  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       2501 TTCCATTAAA

                   *      
       2511 TTCGGCGTTTAAGC
          1 TTCGGCGGTTAAGC

                          
       2525 TTCGGCGGTTAAGC
          1 TTCGGCGGTTAAGC

              
       2539 TT
          1 TT

       2541 TCGAGATCAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.13, C:0.20, G:0.30, T:0.37


Consensus pattern (14 bp):   
TTCGGCGGTTAAGC

Found at i:3379 original size:7 final size:7

Alignment explanation


    Indices: 3364--3400  Score: 65
    Period size: 7  Copynumber: 5.3  Consensus size: 7

       3354 TTCTGATTGA

                   
       3364 AGAGTGC
          1 AGAGTGC

                *  
       3371 AGAGAGC
          1 AGAGTGC

                   
       3378 AGAGTGC
          1 AGAGTGC

                   
       3385 AGAGTGC
          1 AGAGTGC

                   
       3392 AGAGTGC
          1 AGAGTGC

              
       3399 AG
          1 AG

       3401 TGACTATGCA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.32, C:0.14, G:0.43, T:0.11


Consensus pattern (7 bp):   
AGAGTGC

Done.