Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006322.1 Corchorus capsularis cultivar CVL-1 contig06343, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30610

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--437
36
11.9
36
91
2
674
25
15
10
49
1.76
3--437
73
6.0
73
92
1
680
25
15
10
49
1.76
1705--1744
18
2.2
19
90
4
64
45
2
20
32
1.64
2252--2304
21
2.5
20
85
8
70
28
33
30
7
1.85
11004--11056
21
2.5
20
85
8
70
28
33
30
7
1.85
16695--17228
40
12.9
41
81
8
505
13
28
20
36
1.91
16778--17228
41
11.0
40
82
8
419
13
28
20
37
1.91
16690--17185
88
5.9
83
79
12
409
13
28
20
36
1.91
16690--17228
129
4.3
129
85
7
663
13
28
20
36
1.91
18391--18452
25
2.5
25
86
2
81
38
19
12
29
1.89
19268--19312
22
2.0
23
86
4
65
44
6
0
48
1.29
19374--19479
21
5.0
21
80
1
104
29
12
18
39
1.87
19577--19623
21
2.2
21
92
0
76
25
14
29
29
1.95
19318--19623
165
1.9
165
84
0
414
31
12
21
34
1.91
19990--20145
21
7.4
22
76
5
92
35
19
13
31
1.91
20012--20141
42
3.1
42
82
0
161
34
22
13
29
1.93
19992--20145
63
2.4
63
78
2
157
35
19
13
31
1.91
20313--20338
12
2.2
12
100
0
52
38
19
0
42
1.51
25645--25684
6
6.5
6
94
5
71
52
15
0
32
1.43
25681--25714
12
2.7
13
90
4
52
58
8
11
20
1.59
26625--26649
10
2.5
10
100
0
50
24
8
20
48
1.76

Tables:   1

The End!