Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006325.1 Corchorus capsularis cultivar CVL-1 contig06346, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 27954
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29


Found at i:7442 original size:29 final size:29

Alignment explanation


    Indices: 7398--7459  Score: 99
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       7388 TTCTTCTCGC

                               *         
       7398 CCCTTCGCCTTACGGCTCATCCTATCATG
          1 CCCTTCGCCTTACGGCTCACCCTATCATG

                                          
       7427 CCCTTCGCC-TATCGGCTCACCCTATCATG
          1 CCCTTCGCCTTA-CGGCTCACCCTATCATG

                
       7456 CCCT
          1 CCCT

       7460 CTCCTTTTAG


Statistics
Matches: 31,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  28    2  0.06
  29   29  0.94

ACGTcount: A:0.13, C:0.45, G:0.13, T:0.29


Consensus pattern (29 bp):   
CCCTTCGCCTTACGGCTCACCCTATCATG
Done.