Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006329.1 Corchorus capsularis cultivar CVL-1 contig06350, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1942
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:788 original size:33 final size:33

Alignment explanation


    Indices: 713--824  Score: 120
    Period size: 33  Copynumber: 3.4  Consensus size: 33

        703 AGACAAAGGA

                                  *    *      
        713 TCGCGTGGCCGGTTGTGGCCGGGCATGGCCGA-G
          1 TCGCGTGGCCGGTTGTGGCCGGACATGTCC-ATG

               **           * *   *          
        746 TCGTTTGGCCGGTTGTAGTCGGTCATGTCCATG
          1 TCGCGTGGCCGGTTGTGGCCGGACATGTCCATG

                                       *      
        779 TCGCGTGGCCGG-TGATGGCCGGACATATCCATG
          1 TCGCGTGGCCGGTTG-TGGCCGGACATGTCCATG

                         
        812 TCGCGTGGCCGGT
          1 TCGCGTGGCCGGT

        825 GTTGCGCGGC


Statistics
Matches: 64,  Mismatches: 12, Indels: 5
        0.79            0.15        0.06

Matches are distributed among these distances:
  32    3  0.05
  33   61  0.95

ACGTcount: A:0.09, C:0.26, G:0.40, T:0.25


Consensus pattern (33 bp):   
TCGCGTGGCCGGTTGTGGCCGGACATGTCCATG
Done.