Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006334.1 Corchorus capsularis cultivar CVL-1 contig06355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4685
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37


Found at i:4414 original size:15 final size:16

Alignment explanation


    Indices: 4394--4427  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       4384 GATTGCTTTC

                         *  
       4394 TTAGTTA-ATTTACTT
          1 TTAGTTAGATTTAATT

                            
       4409 TTAGTTAGATTTAATT
          1 TTAGTTAGATTTAATT

               
       4425 TTA
          1 TTA

       4428 TTTCTTCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.29, C:0.03, G:0.09, T:0.59


Consensus pattern (16 bp):   
TTAGTTAGATTTAATT

Done.