Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006337.1 Corchorus capsularis cultivar CVL-1 contig06358, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20185

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
812--849
19
2.1
18
90
5
58
28
21
2
47
1.64
2722--2783
26
2.4
27
86
5
92
53
3
14
29
1.57
2768--3013
22
11.0
22
66
17
71
53
4
21
19
1.64
2842--2905
29
2.2
28
83
10
76
54
4
20
20
1.62
2850--2913
15
4.4
14
75
16
67
56
4
17
21
1.59
2850--2947
15
6.7
15
65
26
50
55
5
17
22
1.62
2851--3015
65
2.5
66
79
11
162
53
6
19
21
1.66
2886--3110
21
11.0
21
69
17
116
50
6
21
21
1.70
2916--3019
43
2.4
44
81
1
138
50
6
21
21
1.71
2916--3019
22
4.8
22
78
7
113
50
6
21
21
1.71
2974--3090
42
3.1
36
79
16
137
50
5
21
22
1.70
3008--3110
42
2.5
41
82
4
143
49
5
23
21
1.71
3114--3194
35
2.3
35
78
8
83
58
2
23
16
1.50
3172--3249
27
2.8
28
92
1
131
60
0
24
15
1.35
3239--3292
24
2.3
23
75
9
54
62
1
16
18
1.41
3271--3326
17
3.2
17
82
5
67
58
1
16
23
1.47
15451--15486
18
2.0
18
88
0
54
30
22
11
36
1.89
17979--18151
82
2.1
82
82
4
206
28
20
12
38
1.89
19176--19316
37
3.7
38
74
12
130
47
6
18
27
1.73
19688--19738
26
2.0
26
92
7
86
52
3
15
27
1.60
19726--19776
22
2.3
22
86
6
68
52
1
25
19
1.56
19726--19870
22
6.7
21
68
16
57
55
4
22
18
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19807--19871
15
4.4
15
69
18
55
53
6
18
21
1.66
19836--19973
65
2.1
66
80
12
169
53
5
19
21
1.65
19874--19977
22
4.8
22
80
7
122
51
6
20
21
1.69
19844--20068
21
11.0
21
69
17
125
51
6
21
21
1.70
19874--19977
43
2.4
44
83
1
147
51
6
20
21
1.69
19844--20068
42
5.5
41
75
14
180
51
6
21
21
1.70
20072--20152
35
2.3
35
78
8
83
58
2
23
16
1.50
20122--20181
28
2.1
28
90
3
93
60
1
20
18
1.45

Tables:   1

The End!