Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006344.1 Corchorus capsularis cultivar CVL-1 contig06365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17852

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1401--1479
31
2.5
30
82
15
106
36
21
11
30
1.89
9221--9263
6
7.2
6
91
0
59
18
0
51
30
1.47
11095--11266
36
4.7
36
83
8
204
44
8
19
27
1.79
11073--11254
37
4.9
35
83
7
186
44
8
19
26
1.80
11073--11266
73
2.6
72
81
8
230
44
8
20
27
1.79
11265--11367
41
2.5
41
96
0
188
48
13
18
19
1.81
11464--11759
37
8.4
37
78
12
309
40
9
25
25
1.85
11571--11629
18
3.2
18
65
21
50
40
10
27
22
1.85
11747--11967
73
3.0
74
84
7
245
43
7
21
27
1.79
11750--11976
37
6.2
36
81
8
237
43
7
20
28
1.79
11888--12003
36
3.2
36
69
15
103
54
8
12
24
1.66
11853--12005
73
2.1
73
96
1
281
51
7
15
25
1.69
13618--13874
129
2.0
129
93
0
325
30
19
19
31
1.96
16517--16556
13
2.9
14
85
14
57
87
12
0
0
0.54
16514--16564
17
2.9
17
88
5
66
84
15
0
0
0.63
16514--16558
19
2.4
19
88
7
65
86
13
0
0
0.57
16515--16564
10
4.9
10
80
11
57
86
14
0
0
0.58
16514--16564
9
5.6
9
77
17
52
84
15
0
0
0.63

Tables:   1

The End!