Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006345.1 Corchorus capsularis cultivar CVL-1 contig06366, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3863
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33


Found at i:3435 original size:33 final size:33

Alignment explanation


    Indices: 3390--3475  Score: 145
    Period size: 33  Copynumber: 2.6  Consensus size: 33

       3380 TCTTGTTAGA

                                         *   
       3390 TGAAAATAATTCTGTTTTGGTTGATCATAGCAT
          1 TGAAAATAATTCTGTTTTGGTTGATCATAACAT

              *                              
       3423 TGCAAATAATTCTGTTTTGGTTGATCATAACAT
          1 TGAAAATAATTCTGTTTTGGTTGATCATAACAT

                         *      
       3456 TGAAAATAATTCTATTTTGG
          1 TGAAAATAATTCTGTTTTGG

       3476 ATGAAAAGAA


Statistics
Matches: 49,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  33   49  1.00

ACGTcount: A:0.31, C:0.09, G:0.16, T:0.43


Consensus pattern (33 bp):   
TGAAAATAATTCTGTTTTGGTTGATCATAACAT
Done.