Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006346.1 Corchorus capsularis cultivar CVL-1 contig06367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31616

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9488--10202
38
18.8
38
94
0
1162
49
6
16
27
1.70
10270--10344
32
2.3
32
88
9
107
56
4
18
21
1.58
10572--10613
21
2.0
21
95
4
77
59
4
16
19
1.54
10708--10759
25
2.0
26
88
3
79
55
0
17
26
1.42
10781--10834
16
3.3
16
74
5
54
50
5
18
25
1.69
14694--14729
13
2.8
13
91
0
54
63
0
5
30
1.17
24236--24997
38
20.1
38
93
1
1185
50
6
15
27
1.69
24383--24447
22
3.2
22
65
24
61
52
7
15
24
1.69
25006--25093
32
2.7
32
82
3
104
54
5
17
22
1.63
25398--25427
14
2.1
14
100
0
60
53
6
20
20
1.67
25517--25549
17
1.9
17
93
0
57
51
0
15
33
1.43
25487--25538
25
2.0
26
92
3
88
57
0
17
25
1.40
25432--25597
42
3.9
42
78
7
138
49
3
22
24
1.66
25560--25613
16
3.3
16
74
5
54
50
5
18
25
1.69
27481--27827
35
9.9
34
86
5
453
40
8
18
32
1.81
27482--27827
141
2.5
139
85
4
489
40
8
18
32
1.81
28669--28750
33
2.5
33
92
4
121
25
45
21
7
1.78
29697--29730
8
4.1
8
85
7
50
58
14
2
23
1.50

Tables:   1

The End!