Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006348.1 Corchorus capsularis cultivar CVL-1 contig06369, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 876

Length: 1461
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28


Found at i:773 original size:33 final size:33

Alignment explanation


    Indices: 736--842  Score: 92
    Period size: 33  Copynumber: 3.2  Consensus size: 33

        726 CGCCTAGCTA

                                  *            
        736 TGGCCGGTTG-TGGCCGGACATGTCC-ATGTCACG
          1 TGGCCGG-TGATGGCCGGACATCTCCGA-GTCACG

                          *  *            *  
        769 TGGCCGGTGATGGCGGGGCATCTCCGAGTCGCG
          1 TGGCCGGTGATGGCCGGACATCTCCGAGTCACG

                     *       * *     *    * *
        802 TGGCCGGTGTTGGCCGGGCTTCTCCAAGTCGCA
          1 TGGCCGGTGATGGCCGGACATCTCCGAGTCACG

                    
        835 TGGCCGGT
          1 TGGCCGGT

        843 CACTAGTGCT


Statistics
Matches: 63,  Mismatches: 9, Indels: 4
        0.83            0.12        0.05

Matches are distributed among these distances:
  32    2  0.03
  33   60  0.95
  34    1  0.02

ACGTcount: A:0.09, C:0.28, G:0.40, T:0.22


Consensus pattern (33 bp):   
TGGCCGGTGATGGCCGGACATCTCCGAGTCACG
Done.