genome.fa.s6351.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006351.1 Corchorus capsularis cultivar CVL-1 contig06372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52080

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--389	55	7.1	55	95	0	674	50	7	17	24	1.72
574--954	22	17.4	22	75	12	250	54	5	20	19	1.63
606--963	43	8.1	42	76	10	263	55	5	19	19	1.63
842--897	15	3.9	15	72	9	53	55	5	21	17	1.62
876--997	21	5.7	21	68	23	67	52	5	18	23	1.66
1465--2407	199	4.7	198	85	4	1152	33	12	18	35	1.88
7331--7428	48	2.0	48	90	3	153	46	11	10	31	1.73
12958--13011	19	2.9	19	88	2	83	35	16	7	40	1.77
23568--23609	12	3.5	12	78	12	50	26	59	14	0	1.35
27939--27977	21	1.9	19	85	10	51	17	25	17	38	1.92
32776--32875	36	2.8	35	82	10	105	49	11	11	29	1.72
32913--33177	24	11.0	23	81	10	223	57	10	23	9	1.60
32916--33171	37	7.0	37	80	11	244	57	10	23	9	1.60
32932--33177	11	20.6	11	77	11	195	56	10	23	9	1.62
33171--33582	36	11.5	36	88	2	526	42	9	22	25	1.84
33591--33698	32	3.2	32	80	14	137	47	6	17	28	1.72
33601--33719	36	3.4	36	82	13	167	46	7	18	27	1.76
33591--33719	68	1.9	68	93	3	224	47	6	17	27	1.74
41698--41738	8	5.1	8	96	0	73	85	0	14	0	0.60
42189--43262	438	2.5	435	83	4	1322	43	13	13	30	1.82
43762--43832	37	1.9	37	91	5	117	38	8	15	38	1.78
45993--46028	2	18.5	2	88	5	56	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47651--47721	37	1.9	37	94	0	124	38	8	16	36	1.80
48247--48474	114	2.0	114	95	0	411	27	15	29	27	1.96
49279--49332	20	3.0	18	86	13	76	57	33	0	9	1.31

Tables:   1

The End!